Gene detail

Detailed information of XP_073240896.1 in Porites lutea

Genomic Location: chr4:2816630...2834157
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073384795.1

GTCCCTCAAGGCCTGGCTGCATGACCGTGTCACTGCATTTCACGAGGAGACTAACTTCCTACAAAAACTTCCGAACTTGGATATGTTTAACGTTTTTATATAAGCTCATAGTCCACAAATTAACAGGCAAACAATGACGTTTTCTCCAGGCGATTTAATATGGGCAAAGATGCGTGGATATCCTCATTGGCCCGCCCGGATTGATCTTCCTGCACCAGATGAGAAGATTCCACCCAAAAAGtttgcaatatttttctttggaacaCATGAAACAGCAGTTATGCAAGCCAAAGACTTATTTCCCTATGAGAAGAACAAAgagaagttttcaaaaaactcaAACCGTTCGCGTAGGGGATTTAAGGAGGCATTGGTGGAAATTGTGGAGAACCCAAAGGTGAAGTGGGGAATGAGGGGACAAGAAGaggatgaagaagatgaagaagatgaagatgatgaagaagatgaggacgaggaagaagaaaacaaagatgATTCAGAGGAAGAACAAGAATCTGAGGAGGAGGAACAAAAAGctgaaaagaaatcaaaacaatCGAAACAAAATCAGAAAGAGAAACCcacaaagcaaaaaaagcagCCTGTCTCTGATAAGAAGgaaaaagtCAGCAAggataaaggaaagaaaacagaaagtCAAAAGAAAAAGCGAGAGAAGTCAGAGTCACCTGAAAAGGAGAGTCCTTTTGAGGAAACCCCAGATGAAGAAAGCTCAGAAGATGACAAAGAGGAAGAGGAATACAAACCAGTGCCCAAAAAAAGAGCATCTACTGATTCAGTAGCgagtaaaaataaaaggaaatctTCTAAGGCTGTTAGTGATACCAGCAGCAGCAGTGAGGAAGATCAAGTGGAAGAAAACGACACCTCTGAAAGTGAAgaaccaaagaagaaaaaagcaaaaacacaaGCGGAGACAGAGGTAAAAAAGAAGTCCTCACCAGCCAAAGATTCCatagacaagaaaaaagaggaggaaaagaacaagaacaaagatgaaacagagagaaaaaagcAGGAAAAGCTACAAAAATTAGCTGAGAAGAAggcaatgttaaaggaaaagaagaagaaagaaaaacttgaaCAGCGAAAAGCTGAAAAACAGGCTGCTGAGAAGGCTAGAATGGAACAGAAAGAACAAGAGAAAGAACGAGAAAGACAGGaacgggaaaaagaaaaagaaaaactaagggttaaacaagaaagagaaaaagaaaaggcacAGGAAAGAGCCGAGCGAGAAAAACAGAGAGAAGCTgacaaaaaggagagagaaagaaaaaaatCCACACCGCCTACTGTGGAGGAAATTTTGGACAAAATGAATTATGATCTTGTGATGTCTCTTACTGTTGAGGCTCCTGATGTTCCAAAGTGCTTGAAAATTATTACTCAAATCTCTGAGATGGAAATCAACCCTGATATTATAAAGAAAAACCCAGATATAGTTCAGACAATCAAAAGGaTACGAAACTATAAGCAGAATTCTAAAGTGCGAGAAAAGGCTAGTCAGCTCTACACACAGttcaaatctttatttaaagtcACAGGCTCAGAATCGGCTGCGGACCGGTTACTATCCACTCCTTCAAGTGACCCAAGTTCATCCCTTAATACGACGACATCTGCGGAAGGCAATGAAAGAACCGAGCCTGAAGCGGTGAAAGATTCACAAGCACAAGTGTCTGTGAAGTCAGAAGAAAACACTCAAGCTCACCCCACCCCCACTGAGAATGGCAGTGAAAATCATGTATCCTCTGTAGAACCAAAAGTTGAAGACCAAGAAAACAGAACGAAGGAATGTATACCAGAAGAAAAAAGACCAGAATTGGATACAAGCGTGGATAATCTAACACCAGAACCAATGGAAATACAAAACGACACAACTGAAAACTTATCGCCCTGTGATATGGACATATCAAGCCCAGATTAAGAGTCCTTACCTTTAACATTCAAGAGCCGGTTCCCATATTAGAATGCACGAAATCTGCCAATTTTTATTGTTGGTAACATATTGACAAACATGTGATAGTACTGCTGACGAAGTGTCATATAAGCTGACTCAACATGGGATTTCCATTACGTACTCAACAGTATACCGACTCTGGGAATGCAATTTTTAAGGACAGATCTACAGTACGTATAGCCTAGGATAGCTTACGAATTCAGCCATCACTCGTCGCTCCTGCCCGTAAGGGAGGTTTGCGGGAGAACTGACGGAACGTCGAAAAGTCCCTGGCAGTGAGGAGCAAGAAGAGgactgtattcgcaggctaattctAGGACGGGTGTCCCATTTCTCCAAGGGGTCTACCAATCTTGCCTCTCCCGCGAGATAGGTGTGCCGCGCGCGAGAATCTCTTTTCGCGCGGACTTGTTTAACCTCGCGAGAGAAATGAATGATTGCCCAGTTTAGATAACGTAAACAtgacaatgttttaaaaatccTGAACAGTTGTTTTCATGTCAGCTTTTAGAAACAGTTTGACAAACTGTTTGTCTTTGCGTCGTAagtaagtcgcgtcttattatCTGTTGCATTTCAGCCTTCCGCGAGTTTTATGtaacataaaaatcatctgttgtattttttaaggAGTTACTTTGTGGAAATGAGCGCCTCTGAAGTCATGCAATTAAACCTCGTATTAGTGTCACTTTTTCTACGTAGCAGGTTCACTAACTGTTGTAtcggtcaaaaaaaaaaacaccaagtAGTGTCTGTAAGGAATGCCCAGTTCGTGCCAGCCTCTTCTTTCGCATatagtttttaaattttcttttctatacCTTGTTCCTTTTACTACTCTTTCCTATGTACAGAATAAATTCTTGAATTAGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11467 all species →	LEDGF	Lens epithelium-derived growth factor (LEDGF)	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR036218 all species →	Homologous_superfamily	HIV integrase-binding domain superfamily	Interproscan
IPR021567 all species →	Domain	Lens epithelium-derived growth factor, integrase-binding domain	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12550 all species →	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_073240896.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25065	HDGFL2; hepatoma-derived growth factor-related protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.