Gene detail

Detailed information of XP_073241630.1 in Porites lutea

Genomic Location: chr4:47235019...47243974
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073385529.1

CAAAACGCATggtacaacaacaaaaatggcggGTCATGGATCTGATCCTTCGGATGCCGAAATACGGGGCGCAATGGCAGaCATTTTAAGGGAAGGCGAACTTTCCAAGCTCACATCAAGAATTGTCCGAACTCAGCTGGAAGAGAAGTTTGGTGTGAGTTTCTTAGGAAGgaaaaaagaaattgatgcAATGTTAATGGAAATGATTGAAAACCaagagaaagaaacagaaaatgagAAGGAGCAGGAAAATGGAACTAGTGATCAGGCGAATGGTGTTGAACCAGAAAGAAGTGACCAAGAGGATGAGGAATCAGGGGAGGATGATGAACCTtcagcaaagaagaaaaaacaaGAATCTCATACTGTTGATGATGCTGAGTTAGCTCGCAAGCTTCATGAGGATGAAAAAGGCTTTAGAGCAAGGAGgcaaaacacaaagaaaacagTGgaaaggaaaaaatcagcaagtgcaaaaaaatcaaaagaaaccAAAGGGGAAAACAAAGGCTTTAAAAAGTTAATGGCTTTATCCCCTGTATTGGCTGAACTTGTAGGACAAGACAGAaTGGCAAGAAGTGATATTGTGAAAAAAATGTGGGAAATAATAAGAGAGAGAAAGTTGGAGGATCCTAAAAATAAGAGATTTACAATTTGTGATGAACAGCTGTACCAAGTCTTCGGTTTAAAAAGGTTCCAGACATTTTCAATGATGAAATATTTAAAGAAACACATCAAGGATCCCGAGCTGTTAAGCTAATGGTCAAGTGGTCTTTAGAATACAACACTATTGCATAATGCACTGTCATTTAAAATGAGCATttgatattatttattttgaattcaAAGTACTTACCTTCCTGTAGACGTCTCCAATTTCAGGAGACATCTACACATAAAGTATTAagcctttaagccccaatatccacataaaaATTCTCCCTACTGATCTCCATACGTCTCCTTGAAAAACTGGctgagagaatttgttgaaagatcaaagcattgtCCTTTTGGTAATCATTTTTGTACTGAATTCTCATGTCCCATTCTCTTGATTATCtattgatgttgttaggagaaacttgatgttggtcacttttgggacttTCAGGGTTAAGCAAGACCTTCTTAACTTGTAGAACAGGTGCTATGTTTTCGCGTTTTTCGGGCACGAAGCGGGCCTGGAGCGCGAGACACGCGTGACGGGAAAAAGTGTGGGAGTCGCGCGTGCCTGTGGCTTCCCGCTCGCTTCGCGCTTGCCTTCCCTCGCCTGAGGAACGGCAGGCTAGACTTCCTAAAGTCCCTTTTGGTTGGGTCATCGTTGTGGTTAAGTCTAGGTACTAAGGCAGTCGGCTCTAATAAGACGAGAAACCTCCTGCAGATCACTCACACAGACGAAAGTAGGCGGATTAACACAGATTACTTTTTGCTTAATAAAAATAGTGAATAATAGCTGGAAATCCCAGCTTTCGTTGATTTGCAGTTTATAAGGGAGTTTAGGTAACcctgacggcgacggcaactaAAACTTCCCTAAAAGAGTAAATTCGTGCCGATTCAAACTTCGTCGttactaccgtatttattcgaatgagcgcccaacctcgaattagcggccacccccacccccaccccacccactcaaactcaaataagcgcctaCATTCAAAACCCACCCCCTTCTCCCTCCCACCCAACAAAAATGAAttagtactaataagagacttccccgaagatgGAGTTTTTTTCAgggtattttacagaaacttgctttgttacatcttctcGTTTTGTTATTACCTTTTTTTGATTTGTCGCAAGATAAaaatactacacttgctgaaaatagtgaaaatttaataagtgcctaacctcgaataagcgcctacCTCGAATAAGCggccactctcaaggtccaaaaatttaataagcgcccagggcggttaatcgaataaatacggtgtTCCACCTAGcagttcaatttgtcaaatgttggcgaatttttctgtagttgaattcttaaggattatATCCAatgtcagaaaaaaaacaagctgGAAAACTTACAACCTCCATACAACGTGAACTTTAAAAATgtcacgttttagtcgtgcaGCGACGTCCAAAACTAATTGTTTGTGTTTCAGTAGGACTGAGAAACTTTAAAGCTTCGGTGAAAGGgtcaacaaaaacgtgcaacttgtcttgcaacatggGTACAAAACggttgaaaagcgatgttgcgcgttttaccacccacgttcaaacctgttcACAGTCTGGTTTGTTGGAAGACGACTAATTGATGTTGGTGGTAAAaagcgcaacatcgctattccaCTGGTTTTGGAGCagtgttgcaagacaagttgcatgTGTtttgttgcgcgttttaccgtACCTTAAGTCGGATTTAACATTTGCTGCGTTCACATTCTTCGATCCGTAGATTCCAAAGTATTTTTTTATAGTTGAGCCCTTGCAGTTATTGCAGTATTAAATGTGCCTTTTTGATTTCTCATTCAACTTGTTGTTTTAGTCAGAGCATTTCGTAACTACACAACGgacatttctctttcttttttactgtTGATTCCAAACGCCTAAAACATGGTAAAATTTTTGAGCCCCTAAAAGCTGGTTAATTCGGATAAAAATTGTGCAGTCACAATTTTAAAATCCGAGCAGATTTGTATCTGGtgaattacaatttttttttccgtgcAAGTAGGCAAGGAATGGCGTTTTTTGAAGTCAAGTTGTCATTGTAGTATAGCTCTCTCAAACAGGTTTCTTGCTGTAATTTTGTAAACTGTTCCTACTACATTTGAGTTAAAACTAGTAAAGAGCAATTGtaagtaataaaattataattataccTGGAAAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008379 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan
PF02201 all species →	SWIB	SWIB/MDM2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036885 all species →	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan
IPR019835 all species →	Domain	SWIB domain	Interproscan
IPR003121 all species →	Domain	SWIB/MDM2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13844 all species →	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15223	UAF30, SPP27; upstream activation factor subunit UAF30	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.