Gene detail

Detailed information of XP_073241841.1 in Porites lutea

Genomic Location: chr5:1375361...1386983
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073385740.1

TATGCCAAGATGGCGGCCTGCAAATTCTACATCGTCATTATCAACATTGTTGCTTTGCTTTTTGGTGCAAAATCGCTCAACAATGGACTTGCAAGGACTCCACCAATGGGATGGATGGCCTGGGTAAAGTTCCGCTGCTCTATAAGtgaagCCCTTGTAAAAACAATGGCAGATCACATTGTTTCTGCTGGTTACAAAGATGTTGGTTATGAGTATGTTTCCATTGATGATTGTTGGATGGCACACAATCGCACAGCATGGGGAGAACTACAACCAAATCCAACAGCTTTTCCTAATGGGATGAAGGCTGTTGCTGACTATGTCCATTCCAAAGGCCTTAAGCTAGGAATTTATGCAGATATTGGAACTAGAACATGTGCAGGATTTCCAGGAACTGCAGGTCACTTTCAGCAGGACATGGATACATTTGCCAGCTGGGGTGTGGATTATCTTAAACTAGATGGATGCAATTCAGTTGAGGCAAAATTTGGTACACTTTATCCAGAAGTGACTGTGGCTTTAAACAAGACTGGTCGTCCTATTGTATTTTCTTGTTCTTGGCCAGCAGACCAGACTTTTAAGGATATAAAGCCAAATTACATGCAGGTTGCTGAAAACTGTAACTTATGGCGCTCCTGGTGGGATATGGATACAAACTTTGGAAGAGTTAAGTACATAATAGACTGGATGGGTCAAAACCAAGATGATATCATCCCAGCCGTTGGGTGTGGCAAGTGGAATGATCCCGATCAGCTTGTTGTTGGGGATCGAGGCTTGACAGTTGATGAGTCCAAGGTTCAGTTTGCTATCTGGGCCATTATGGCTGCGcCTCTACAAATGTCCAATGACCTCCGCGATTTCCCAGACTGGGCTAGAGAAATATTACAAAACCGAGAAGTCATCGCTGTAAATCAGGACAAACTCTGCAAAATGGGACGAAGAGTTTTTAAGGGTGAAGAGACTGAAGTCTGGGCTCGTCCTTTGTATGATGGCTCAGTAGCTGTCGCCTTGTTTTCCCGAGCACAGTACAAAGGAACAATGTTTGCATCATTTGAAATGGTTGGACTGCCTTCGTCAATGGCTACGGCCCGTGATCTCTTTGAACACAAAGATCTTGGAAAATACCAAGACATGTTTATGGCAGAAGTAAATCCGAATGGTGTGGTGATGGTCAAATTAACTCCAGTAAAGGAATTGCCgcacactttttaaaaaattgcacaCTTTTTATAGAATTGCAAAATCTTGCAGATTAAATCACTTTTTGTTGCTATTTATTGACAtcaatagagcggttttcacttgactgtcgaaagggattggttttggttttggttttggttttactacgccctttggttggctagtgtatttactttggttttggttttacgacagtcaagtctCTAGGACAAGAACGACCACGATTACgagatttgaaaaagttttttcacCTATTCTCAAGTTATAGACACCCCGTAAAGCTTCATTGCACTTCTTTTTGACCGAAaaattagcactgttatctttactTATGGAGCTTAAGCCATCCCCCGgccgcaaaatgataaaacctctAACACTTTACAACTTGTTTCTGTTACCACGAcgttctcgctaaaactcgtagcaGAATGAGGACGcaatcacgttttcccgccaaaatgacgctggttcacgcgcaaGCCCTACTTAGTTTTgcgaaaatctcgtactcgtagtcgtactcttctcagaatctaaaggtcaTATTCGGGAGTGTACAACAATGTACAGTTTGTCAAAACCCATTCCAATTTGCAAACTTTGCAACCCcgggaaaaaattaatatacttTTTTGAGAATTCCTATGGCTGCACTAGGTTAACCTGTTTGTAAAAGTAGTGAGGTCAATTATTTTGTTGAGGAGACTTTTTTTAAATGTTGTATATACACTGCATTTGCACCGAATTTACACAAAGGTTGAATAAGGGGAGTTAAGTCTTCCAAAGTGTAGTTGCATCAATttcgtaattttttttccttgtgatATATAGTACTTACTGCTTCTCCGAAAAGCTGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16499 all species →	Melibiase_2	Alpha galactosidase A	Family	Interproscan
PF17801 all species →	Melibiase_C	Alpha galactosidase C-terminal beta sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR002241 all species →	Family	Glycoside hydrolase, family 27	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR041233 all species →	Domain	Alpha galactosidase, C-terminal beta sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11452 all species →	ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004557 all species →	Molecular Function	alpha-galactosidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01204	NAGA; alpha-N-acetylgalactosaminidase	EC:3.2.1.49	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.