Gene detail

Detailed information of XP_073242205.1 in Porites lutea

Genomic Location: chr5:16002343...16019810
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073386104.1

ATCCTAAAAAAAGTGTACATGGCTTCCTCCATATAAATGAAAGTGAGTGTTTCTGTGTCAGTTGTGGCAGTTATACACAACTTCAAAGCCTGTTTCGTGGACTAGTGGATATTGTAAATACGAAAATGGATTCAGAGGACGATGATGCTATGTATGACGACGAGCAAGAGGACAGCTTTAACGAATCCGGCTCGGAAGAAGGCGATGAAAGTGACTTCGACATCGATTGCGATGAACCCTCAACTCCGAAGAGACCTCACATAAATGACGATTTTCATTACGAATGTCTAACTCCTGAAGCTTTAGTCAGTTATATGAATGATATCATCGATGAAGTAAATAATGTTTTTCAGTTACCAAGACCAACTACAAGGATTCTTTTAAGTCACTTTAAATGGGATAAAGAAAAACTACTAGAAAGGTATTACAGTGGAGATCAAGACAGACTCTTTACTGAAGCTCATATAATTAGTCCACATAGAACAAATGCTAGACCAGTTTCAACTAAAAGGGTTAACACAAGGTCGTCATCAGCATCAACAGAGGCAAACTGTGAAATCTGCTTGAATATCACACAGGCATCAGCTTTTACTGGTTTAGAATGCAGTCATAGGTTTTGCAGTAGATGTTGGAAGGAGTACATTACTACTAAAGTTATGGATGAGCATGTGGGAGAGaATATTTCTTGTCCTGCTCACAAGTGTGACATCCTTGTAGATGAAGTTTTTGTAGGGAAAGTTGTAAAAGATAGCAAAGTGAAAGCTCGATACCACCATCTGATAGCTCACAGCTTTGTTGAGAGTAACCGATTGATGAGTTGGTGCCCTGGACCAGACTGTCAAAATGCAGTCAAGGCTAACTACCACGATGCTTTACCAGTGACATGTCTCTGTGGCTATACATTTTGTTTTGGCTGTGGAGAACCAGTTCATGAGCCTGTTAGATGCCATTGGCTCAAGAAGTGGATAAAGAAGTGTAATGATGACAGTGAAACATCAAACTGGATATCAGCAAACACAAAgGAATGTCCGAAGTGTCATGTGACAATAGAAAAAAATGGTGGCTGTAATCACATGGTTTGTCGTAATAACAACTGCAAGGCTGACTTTTGTTGGATGTGTCTGGGACCCTGGGAACCTCATGGATCAAGCTGGTACAGTTGTAATCGTTATGACGAGAAAGATGCCCAGGCTGCCCGGGATGCTCAAGCTAAATCACGGCAAGCCTTGGAGCGTTACTTGTTTTACTGTAACAGGTACATGAACCATGCTCAGAGTGCCAAGTTTGAATACAAGCTGTATGCCCAGGTGAAGCAAAAGATGGAAGAAATGCAGCAGCACAACATGTCATGGATTGAGGTCCAGTTTCTTAGAAAGGCTGTGGATGTTCTGTGTTTATGCAGGAACACACTGAAATATACCTACGTCTTTGCTTTCTACCTGAAGAAAAACAACCAATCTGTCATCTTTGAGGATAACCAAAAAGACCTCGAAATGGCTACAGAAACTCTGTCAGAGTACCTTGAGCGTGATATAACGTCTGAGTGTTTATCAGATATAAAACAAAAGGTTCAAGATAAATACAGGTATTGCGAAGCGAGGCGAAAAGCACTTTTAGACCACGTATACGAGGGATACGAGACCGACATTTGGGAGTACGTCGATTACGACTGAAGTCGTATATTCTTAAAGATTTAAGAGAATTCATGTAAGACTAGGATATAAAAGGAGTATGCTGGACCAGATTGCTTACTGTTCAATAGTTGAAGTTCGTATTTGCAAATCGTATCACATAGAGACTTATAGATGTACATAAATGGACAAATGTTTGTGCTTGAGATGTGACCCTAATTGGTGTTATTGTGTATTCGTGACGTGCGTAGAGGCCGGTGTAAAACCAGACTCGCTTGGTGTACGATGTAGCCGCGACAGAGGCGAAAATGAGAGATAATTGAAACACATTTGAAACACTCAGTAACAACttatgccccattcacaccaaagcttTAACTTGTTTAAAAGAGTTTTTGCGAAAacggtttaaaattgtttttataagAAGGCTGTTCACTGAGTTTTGTCGACTACAAGTGTAGCACGACTGAAAGCACAAAATAAGTCACTTGATCTTGTGTAATAGCCATTCCTGCCATTTTCTttgactgattttttttcctatcTTTTTTAACTGAATAAGCTTTTGGTGTGGATTGAGCATTAACGCGCAAAGCGATTGGCGCGATCTGTTCCTGCGAAGTGTGCGAGAATAAATCGTTTCTTCCTTTCAGCGACTGCACTCTAATCCTGAcgatgaaaattatttttgcattttaggGGGAAATGTTTCTTAAGACGGCGAGATCATTTTATCTCATTTAAAAGTGTTTTGGGATTTTTGTTGGTGCCTTGATTATAACTGAAACAACTTTCTGTTCCACAAATTACAGTGCTTAGGTTATTGGCAGCACCACCGcgttaaggtgatgttacacgagacgattcgcaatgaCGATTTGtagcacaacacagcgttgcaacattgttgcgacattgttttgcaacattgttctaacattgcaacgctgtgttgcgctaaaaatcgtcgttacgaatcgtcccgtgtaacatcacctttataggccatttccgagtatcctcaagcctctgtttcaaagcgaggctaagtgctaTGCCATTGATCTGACaatgattttttaattcttatgcaaataaaactcatttttacaagGTAAGTTTTGCACTTAGCCCAGTTTTGTAAGTGAAAGTTTTGGGATCTAGGAATTGGCCTATTGGTTAAGTCAAGTtataacaccaaaaaaaaaaaataaacatttattATCTTGTACGCGATCTGGAAGATAAAGCCAGGCCAAGAAGAAAGCTGGAAACAGCAAGACAGTCGCCGTCTAATTTGCCGTATATGCGTGACTATGATGTCTGGTCGAGATATATCCTGATGAACTTGTCGTGGAACATTTTAGATAGTTTTATGATTAACAAGGAAGAACTGTGAGGACATCTGTTTGTAGCCTCGACGTCATTTTCTTCACTTAAAGGTGTATGTTTCCAGGTTTCTGTTCAATCTACTTTTCAACCCGCTTTTGCTTGTAAATAAACTTAATAATTTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF21235 all species →	ARI1_UBAl	E3 ubiquitin-protein ligase ARIH1, UBA-like domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF19422 all species →	Ariadne	Ariadne domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR048962 all species →	Domain	E3 ubiquitin-protein ligase ARIH1-like, UBA-like domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR045840 all species →	Domain	Ariadne domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11968	ARIH1; ariadne-1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.