Detailed information of XP_073242363.1 in Porites lutea

Genomic Location: chr5:1513827...1562702
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000251 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19236
all species →
ADAMTS_CR_3ADAMTS cysteine-rich domainDomainInterproscan
PF17771
all species →
ADAMTS_CR_2ADAMTS cysteine-rich domain 2DomainInterproscan
PF13688
all species →
Reprolysin_5Metallo-peptidase family M12FamilyInterproscan
PF00090
all species →
TSP_1Thrombospondin type 1 domainDomainInterproscan
PF07534
all species →
TLDTLDDomainInterproscan
PF05986
all species →
ADAMTS_spacer1ADAM-TS Spacer 1DomainInterproscan
PF19030
all species →
TSP1_ADAMTSThrombospondin type 1 domainDomainInterproscan
PF01562
all species →
Pep_M12B_propepReprolysin family propeptideFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045371
all species →
DomainADAMTS/ADAMTS-like, cysteine-rich domain 3Interproscan
IPR013273
all species →
FamilyADAMTS/ADAMTS-likeInterproscan
IPR036383
all species →
Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR001590
all species →
DomainPeptidase M12B, ADAM/reprolysinInterproscan
IPR006571
all species →
DomainTLDc domainInterproscan
IPR000884
all species →
RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR024079
all species →
Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR041645
all species →
DomainADAMTS, cysteine-rich domain 2Interproscan
IPR050439
all species →
FamilyADAMTS and ADAMTS-likeInterproscan
IPR006586
all species →
DomainADAM, cysteine-rich domainInterproscan
IPR010294
all species →
DomainADAMTS/ADAMTS-like, Spacer 1Interproscan
IPR002870
all species →
DomainPeptidase M12B, propeptideInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13723
all species →
ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030198
all species →
Biological Processextracellular matrix organizationInterproscan
GO:0004222
all species →
Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008237
all species →
Molecular Functionmetallopeptidase activityInterproscan
GO:0031012
all species →
Cellular Componentextracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_073242363.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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