Gene detail

Detailed information of XP_073242882.1 in Porites lutea

Genomic Location: chr5:3310376...3318822
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073386781.1

AAAGGGTTGCTTGGTGACCAAGTAAATTTTATCCTGAAGTAATCCGCGTTGTAAAGAACGTGACTTTTGCAAAACTCTTCCAACTTTTGATTACAATTTAGATTTCGAAAAGGTGCGTCCATAGAGAACGTCATTCACGTATTTTACGCTTTGAttacacttctttttaaatgagCAATGCGTTTGTTCCCGTGAAAAGACGAAGCGGCTGTTTCTCTGTGACAGAACTCGTTGCTACTTTCAATGCCACGGCATGTTTCTTGACTAATCTCTTCTTTGAGAAGTAAACACGAGGATTTGAACACTTCAAAATGGGTGCCATTGTATCTCATCGAAAAGAAGCTCGAAGAATAACAAGGGTGGAACAGAAAGCCATAGCGGTCAATGCTTTTTCTACAACCATAAAAACAGATGAACAGTCAAAAGAAGAGGAGAAAGGTATAGCTGCAACACCTGTCCAGCAGCCAGCACATGAAGGAAGCCCTGCGACAGCTCGGAGCAGAACTCCAAGCATTGCTGTGGCATCTTGGGGTGAAGGGATTGTTGGCACATCATCACATGCCCTTCATAGTAAGGGTGTGGCATCATCAAGGGGTGTACAACATGAGGTCAAATCAAGCAAGGACATGTACCCTATGCAGAAGCCCAATACACCTGATCCAAACAAGAACAGTGAACTTGATACAAGTTTCGCAAGAGTCCATCCAATAACACCACAATCAAGGACAGAAAAAGCAGCTGTTACCATTCAAAGACATATCAGAgggtatcagtccaggaagcgtCTTGAACAAGAGCAAGAGTCAGCTAAAATTATTCAACGGAGATACCGAAAGTACCAGAATACTAAAGAAAAGAGAGATGACCTTACTCAGCCTTCAGAAACCATAAAGgaaaatgataatgatggtgATAGTAGTGAGAATGATGAGGacacgaaaagaaaacaagaatacAGAAAGCCTTGGAGAGAATCGACTGTTGCTGCACCTGTTATTGACACAGATGTCAAGATTGgtgacaaaacaaaagaaagctttgataTGTATCAAGAAGATATCACAGACTTGAAATGGAAAACAGAGCAACAGTTGGAAATGACAACCATGGGAGACAACTATGTTCCTCCTAGAATAGTGGTTATTGCATCAAATGTGCCAAGAGCAGATGTGCTTGAGAAGATTGTCCAAGATGACATCCTCCAGATAACTTATGATTTTGCAACAGCAACACTACAAGATGTTTTAGATAGAATTGTAGCTatacttgaaaagtttcaaagcAAGAGCAAGGCAAGATCAATAGCCTTTGTTTGCCAGGGTGGTCCTGGCTTTTTTAATCCTGTCAAAGGAAAGATTGTAACCAAGGCTAAAGTAAAGCAAGATAAGGAGTTAAGCAGTTTTTGGACTACGCTGGGTGCCTGTATGACCAAGTTAAATCCGGATGAAACAAAGATCCACATTATTGGGAATAATGTAACTGGCAACAAGAAAGGAGAAAGTTTGTTGAAGTTTCTCTCCAAGGCCATGAAGCCATCCAAAGTCAAAGTTGAGTCGCCACTGGAATTAGGGCAAGCAGGTCGAGAGATGCTGGCTCTTTATTTTCATCACGATAAGTACAAAATATGGAAAAGCAGGATGCATTCCAAGATCTCATTCACATTGTGATTTGAAATGGAGATCAGCTGGACCATCTTATTGtgttaaatgttaattttataATATTTAGTATGGTTATCAATATTACACACAGGCCTTTTAACTTAGTTAAGAATGAAAAAAAGTAGAAGCTCTCAACTTTACCCTTAGCGTCTCACTGCATAGCAGtacataatttattattttactctTTTGACCTaacatataataataataattagatTCCATTATTCTAGTGGTCCCTATTGACAAAAACTGTCATTTCTTTTCTAATGACATATATTAAGTAATAACAATGGAGATACCACAGAAACTCAATTCTAACtcactaaaaaaaatgaattaatcatACGTGCAACTGTACCTCTTTCAAGTTTTATGAGCAGTTCGGATTGATAGACATTACAGAACCAAACACAATAAAGCTCTTCATtccttataattattttaatactgGTTGTaaatattacaaaaaaagaaaaacaaacaaacaggaaaaCCAACTTGTAAAAAatgtgttattgaccaagcatCAGGTCAAGATAGCTGTACACGTAAAATGCAGTAAATATGTGATAAAATATTTTAGTGATTTCAGAATATTTAAATTCGAAGAAATGTAATAATTTACACCAGGTACTGTAACTCACAATAATAGTAATTTCTGTATTAATAATAGTTGATTGGtatatttaaatatttattgcTCCTAATTAATTGGTCGTTCAAACATTGTCAAAGCCAACAACTTCAGGAACCATAGTTATAATCACTAGCATCTTGTAAATAAATTGTGAAGATAAACAGTCATGCAACTTAAAATGTCCCACACTTCAAGAAAGCTGCTATAGAATAAAAGGTTTGTTAAATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR033374 all species →	Family	NMDA receptor synaptonuclear signalling and neuronal migration factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32061 all species →	NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0048168 all species →	Biological Process	regulation of neuronal synaptic plasticity	Interproscan
GO:2001222 all species →	Biological Process	regulation of neuron migration	Interproscan
GO:2001224 all species →	Biological Process	positive regulation of neuron migration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23844	NSMF; NMDA receptor synaptonuclear signaling and neuronal migration factor	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.