Gene detail

Detailed information of XP_073243197.1 in Porites lutea

Genomic Location: chr5:288219...295017
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073387096.1

CATAAcaatcaaaatggcggattgGGATGACGAAGATTTTGAGCCCCAAGAGTTTGGCGTTAAACAATCAGACAAATGGGAAGGAGAAGACGAAGATGACAAGGATGTGAAGGATAACTGGGACGACGATGAAGAGGAAGACACAGAACAGAAAGCAGATTCAACACAAACGGAATCCGCTCCTGCAGCTAAggtgaagaaaaggaaaacaatcaAACAGAAGATACTAGAAAAAGAGGATCAAGCAAGAGAAAAGGCCCTTAAACGTGAGCAGGATAAAAAACTACAGGATGAGgAAGAGGAAAAACCTTTAACAGAAGAGGAACTTATGGCTGAAAAGCTAAGAAGACAAAAATTGGTGGAGGAATCAGACTTGGAATTAGCAAAACAAGCTTTTGGTGTAACGGATGATATACCGGTAGACACAAAAAGTATAGATGCAATGAGTCCTAGCACAAGAGAAGAATTTGTCCAACTCAGTGACTTAATTGTAggaaaattaacaaaatatgAGTCTTGTACAGAGTATATTCCATTCTTGGAAATGCTGTTTAGAGATTTATGTGCTGGCTTGGAAGCTGAGGATGTTAAAAGATTAGGCAGTGCAATAAATATTTTGTCATCAGAGAAATTAAAAGCCCAAAAGGCCAAGAAAGGTAAAAAGTCTGCTAAGAAAGCAACTTTAGCAGGCACCAGTGCCAAGGCTGGCAGAAAAGATGATTTGGATGCATTTGGTGGAGGAAATTATGATTACGGTGATGAATTTGATGACTTCATGTGACACTGACTTGGACAATCAAAGAGAATAAAGTGAAAATTAACAAACAATACATTCAAAATATAGTATTGTTTGCTGAAAACTTTAATGTCAACACTGAGCTAAGTATAGACACTTGCTTCACTTAGGTCATGGGACAGAGCCTGTAGCATGTTAGTGTGCTAcaaatgaatattttaaaaagtgacCCAGCTAATAATGAATCTCACTGGAAAAGCTTAGCTTCCAAATATTTAAGTTAATAACCCAGAGCATTGATCAATAATTTTCAGAGTAATGTTATGTGTCCCACACACACTACTTTGGACATAGCTGATCTTTTTTAATTGAAGGGAGGATTTGTCACATCTGGCCAGAACTCTTACTCTCTCTTCTCTTTATGATGGACACAGCTGGGACCAGTGCTAGGGGTCCATCTCTGGGGTGTACCCAGCCTTTTTCAAGGGGCAAGAAGGAGTGCAAAATATCTGAAATGGTAGCTTACAGGCTTGTGTGCATGTACTAGTCGTTGGAAAACAAGCTGTTGTTAAATATGCCATCTTAAAAGGTATAGAATACCACGGTAACATTTTCATTTACATTTTGAAATCTTATGTGCAAGAGCAAAACCCCCTTGAACACTCCCTCCCGTTTGTACTCCCCTGTGTATTCCCCTGATCTTGTAGCATGTCTGCCTTAAAGAGAGTCAAAGAATATGACTGAGAaacggcagggaccaactccaAAATGTCCATCATGTGGAGTTGGGAGAGTGACCCTTTTTTGTGGGCAAATAAAAGTAATCATATTACTTTAATCTGCTGATGCTAGTTGAAATCTCAAGTTGGACCTTACTTCATTTCCAGTTACTTGTGATTGTTTATCTGGACATATTAAGGGGCCAAGAAGGGGTGAGAGGGCAGCTGAATTACATGTATCACCTCCTGTTTTCACTCTGTCCTTGTTTCCATCATCCCCAAATTGAGCTTCACATCTTAGAAGAGTGTGTAGAGGAGGTAGAGATGGACCTACTGAAGAAGCAggtcttctttatttttggtcgTTTTTGATAGATGAACAACACTTTAACTATTTCCAGACCCCCTCATGTCAGGCCAGATGTGATAATTTGCCTCAAGTCATTACAAGATACCCATGTTTTCAGACTTAGCAATGCAAAGAGAAGCTATGGAGAAAATAAATctattttacttaaaatatcGAGTATAGTTCCAATCTTTCCTTGCTTTTCAAGAAGAAATCAAGAAACGTATCTGAACATAGTTTGGAAGCATGTTATCTTATTCTCATCAACAACTTCACTTTGTCAAGACATCTTAAATATATAGTCTTAGTTTTCTATGAAATCAATAAAGTAAAGTGAACTGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08597 all species →	eIF3_subunit	Translation initiation factor eIF3 subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013906 all species →	Family	Eukaryotic translation initiation factor 3 subunit J	Interproscan
IPR023194 all species →	Homologous_superfamily	Eukaryotic translation initiation factor 3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21681 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03245	EIF3J; translation initiation factor 3 subunit J	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.