Gene detail

Detailed information of XP_073243238.1 in Porites lutea

Genomic Location: chr5:39518673...39541357
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140937581

ATGGCGCCGATCCTTGGGTCGGTGCCGCAAGTTTTACGGCAAGCAGAAACGTTGAAAGCCGCTTTAAAGAGTAATGTTAATGATTTCACTGTTGGTAGTGAAGGATGGCAATCGAGACAAAGATTACAAGACTTGTACAAGAGCATCCTTTTAACAGACCTAGAGTCTGCATTGGACCAGAAGGTTGAACAAGACCTGTGGAATAGTGCTTTCAAAAGCCAAGTGGATTTTCTAAGACAACAGGCCAAAGAACGAAAGGGCTCAAAAAAGGGGGAAGTCCAGGCCATTTTGACCTTGTTTCTTGAGGCTGCCAGTGGCTTCTATATCCAGCTTTTGCAGGAGCTGTGTTTGACATACAGGCTAGACATTCCTGGTCATGTGAGATCCTCACAGTTAGGCATTCTTGAAGAAATTAATGGCAACACCAATCTAGCCAAGAGGCCACACACTCAGTCTTGTTATTACATCTGCCAAGACTGTCTGGTGCACCTGGGGGATATTGCTCGGTATTGTGATGACCAGGACCAAGCTGAAGTGTTTTACCATCATGCTCTTGTTTTAGTTCCTTCAAATGGTCAGCCATACAACCAGTTGGCAATTTTAGCAAGTGGAAAAGGGGATGAGTTGGCAACAGTGTACTACTATTGCAGGAGCATTGCTGTTAAAAATCCATTCCCAGCTGCTTCAACCAACCTCCACAAAACACTCACCAAAGTTGTTTCCAGACATAATACAAGGGACACAGCTTTAGAAATATCCATGGCAGAGTTTGGCCACATTTTTCTTCAGTTTCATGGTCATGTGTATCTCGTCCAAGATCTTGATCAAGCGAGAACTCTTAAAGACCGCATAATAGCTGCATTCAAAGGAATTTTAAAGAAGAACAAATTCACTTCGCAGTTGCTTAATAAACTGGTAGCCATTACTCTGTTTGTTCTGTGGAACATACGGACAGGTGGATCAGCGGATGATCTGGAGGAGTTTGATTGTATTGGCAAAGATGAAGAGGAATGCTGGCAGCTGACTCTAGAGTTTACAGTGGAGTTATTCGATGCACTTGTGTTGCATGCTTGTGAGACTGGACCACCGGCTTCAAGTACTGAGCAACAGCAATCTATGGCAGAAAGCTGTGATGTGCTCCCATCTGTGAATCTCTTGTGTCAGTGGATGGCCGGTTCATCACCAAACATCTGGAATGGAGACATTCTCAAAAGAACAAAGATTTGGGAAAATTTTGCTGCTCTACTGAATCTTCTTCAAGTGACGCATTCTCCTCTGCCTGAGAGAACTGATATTCCCCTTCATGAAGACTGGGAGCTTCAAAGTTTTCTGCCTCTTAGAGTCAGCCAGAGGAAGCTTACGTATAGCATGAAGAGGACTCGGCCCGATGATGAATCTGCCCACAGAGTTAGCAGGCTTGTTAGGTTTGGAAATCGTCTGGCGAACAACGCTCCTTGTATCTTGGCTAAAGTGGAAGATCTTGCAACTGGTCTGTCAAACTTTTCTTTGAAGATAAACACTTCCTCGCCCATTGAAGAGGTCTCATCTCAGGAGGAGAAGTTTCCCAAGTCACCTCAAGACATCGATTTAGAATCTGCGGGACAAAAGTTACTGGCTTCTTTACCTACTCTGAATAAGGCTACAACAGTGGGAACCCCATTTGCTGAAACTAGCTCCTTGTTCAAGGGTCCCTTAGATGTTGGTCATACCCAAGTAGGACAAGTTCCACCCTCCCCCTCCACTGTAGCTCAGTATTCATTGTTCCAATCAGGATGGAATGTTTCCTTGACTTCTGCAGCTCTTGCTCATCCAGAAAATTCATCGGCAAGACCCGTTGGTAAGCCACCAAATCACCGTGCGACCCCCACCGATCATTTGGCGAGCCCAGGAAGTAGCTCTGTGTTTCCACCTACCCTACCCTCCCCAACTGTGGAGAACCGCAGACCCACCAGCTTTGGAACCAGTTTCCCCGCAGCTGGAATGCAGCCCAACTATCATTCTCCGTCCCAGTCTCCATTTGGTGGCTTTGGGTTCAATGGTGGTTGGGGTGGTTCAGGGGTCTGGGCTCCCAATTCGTCAACTCCAAGCGGTAGTGGAGGAACAAGTCCTGCTGGGAATCACGGTCTACAGTCCATCTGGGGATCAGACTTCGCGGCATCTCCATCCGAGGGTATGTCACCTTTGCAGCAACTGTTACAGGAGCAGAAAAAACACCAACAGAAGGATACTTGA

Transcript

rna-XM_073387137.1

CGGAACGATGAACTAACATGGCGCCGATCCTTGGGTCGGTGCCGCAAGTTTTACGGCAAGCAGAAACGTTGAAAGCCGCTTTAAAGAGTAATGTTAATGATTTCACTGTTGGTAGTGAAGGATGGCAATCGAGACAAAGatTACAAGACTTGTACAAGAGCATCCTTTTAACAGACCTAGAGTCTGCATTGGACCAGAAGGTTGAACAAGACCTGTGGAATAGTGCTTTCAAAAGCCAAGTGGATTTTCTAAGACAACAGGCCAAAGAACGAAAGGGCTCAAAAAAGGGGGAAGTCCAGGCCATTTTGACCTTGTTTCTTGAGGCTGCCAGTGGCTTCTATATCCAGCTTTTGCAGGAGCTGTGTTTGACATACAGGCTAGACATTCCTGGTCATGTGAGATCCTCACAGTTAGGCATTCTTGAAGAAATTAATGGCAACACCAATCTAGCCAAGAGGCCACACACTCAGTCTTGTTATTACATCTGCCAAGACTGTCTGGTGCACCTGGGGGATATTGCTCGGTATTGTGATGACCAGGACCAAGCTGAAGTGTTTTACCATCATGCTCTTGTTTTAGTTCCTTCAAATGGTCAGCCATACAACCAGTTGGCAATTTTAGCAAGTGGAAAAGGGGATGAGTTGGCAACAGTGTACTACTATTGCAGGAGCATTGCTGTTAAAAATCCATTCCCAGCTGCTTCAACCAACCTCCACAAAACACTCACCAAAGTTGTTTCCAGACATAATACAAGGGACACAGCTTTAGAAATATCCATGGCAGAGTTTGGCCACATTTTTCTTCAGTTTCATGGTCATGTGTATCTCGTCCAAGATCTTGATCAAGCGAGAACTCTTAAAGACCGCATAATAGCTGCATTCAAAGGAATTTTAAAGAAGAACAAATTCACTTCGCAGTTGCTTAATAAACTGGTAGCCATTACTCTGTTTGTTCTGTGGAACATACGGACAGGTGGATCAGCGGATGATCTGGAGGAGTTTGATTGTATTGGCAAAGATGAAGAGGAATGCTGGCAGCTGACTCTAGAGTTTACAGTGGAGTTATTCGATGCACTTGTGTTGCATGCTTGTGAGACTGGACCACCGGCTTCAAGTACTGAGCAACAGCAATCTATGGCAGAAAGCTGTGATGTGCTCCCATCTGTGAATCTCTTGTGTCAGTGGATGGCCGGTTCATCACCAAACATCTGGAATGGAGACATTCTCAAAAGAACAAAGATTTGGGAAAATTTTGCTGCTCTACTGAATCTTCTTCAAGTGACGCATTCTCCTCTGCCTGAGAGAACTGATATTCCCCTTCATGAAGACTGGGAGCTTCAAAGTTTTCTGCCTCTTAGAGTCAGCCAGAGGAAGCTTACGTATAGCATGAAGAGGACTCGGCCCGATGATGAATCTGCCCACAGAGTTAGCAGGCTTGTTAGGTTTGGAAATCGTCTGGCGAACAACGCTCCTTGTATCTTGGCTAAAGTGGAAGATCTTGCAACTGGTCTGTCAAACTTTTCTTTGAAGATAAACACTTCCTCGCCCATTGAAGAGGTCTCATCTCAGGAGGAGAAGTTTCCCAAGTCACCTCAAGACATCGATTTAGAATCTGCGGGACAAAAGTTACTGGCTTCTTTACCTACTCTGAATAAGgctaCAACAGTGGGAACCCCATTTGCTGAAACTAGCTCCTTGTTCAAGGGTCCCTTAGATGTTGGTCATACCCAAGTAGGACAAGTTCCACCCTCCCCCTCCACTGTAGCTCAGTATTCATTGTTCCAATCAGGATGGAATGTTTCCTTGACTTCTGCAGCTCTTGCTCATCCAGAAAATTCATCGGCAAGACCCGTTGGTAAGCCACCAAATCACCGTGCGACCCCCACCGATCATTTGGCGAGCCCAGGAAGTAGCTCTGTGTTTCCACCTACCCTACCCTCCCCAACTGTGGAGAACCGCAGACCCACCAGCTTTGGAACCAGTTTCCCCGCAGCTGGAATGCAGCCCAACTATCATTCTCCGTCCCAGTCTCCATTTGGTGGCTTTGGGTTCAATGGTGGTTGGGGTGGTTCAGGGGTCTGGGCTCCCAATTCGTCAACTCCAAGCGGTAGTGGAGGAACAAGTCCTGCTGGGAATCACGGTCTACAGTCCATCTGGGGATCAGACTTCGCGGCATCTCCATCCGAGGGTATGTCACCTTTGCAGCAACTGTTACAGGAGCAGAAAAAACACCAACAGAAGGATACTTGATAAACACAGCTGATCAATCTGGCAAGAAAAGCTGCTGATAACTTCACTTTCCCTCGCAACATGATGTTGAGGACCTTATCACGCAAGGGCTTACAACACCCCAACTCAACGGCAAATTCACTGGTTTTGCTAGTTCTAGGCCATTAGCCGCCTTGCGAATGTAAGAAAGACAAGAATGCTTTTATTTGCACCGGCGTCCGGTGCTGGGAATCTAGTGGGCCCTTTAGACTACCTTTTCAGTCCATGCCTTTTGTAGTGTTTGGCACAGATGACTAGAAGACACCCTAGCCGAGAGGAGCATTTTTCGTCAAGTTACACCGAAGTCCTGTATTATGACCACTGTATCGTTGTCTCCACGCAGAAAGCTTCACAAACAAGAGAAATGTTGAGGAGACGAATTCTTTTGACATTTTCTTTGTTAAAAGACCACGTAATCCCCGGGTTCTTAGCAAATATATTGTCAAAGTTTCTTAAGCTTGATTTGAGGCTTGTATTAGTTTGTTATCACATTTAACATATAAATTATCAATAACGTTTAACTTAAGCGCGAACTTTGATTAACAGAACACAGGTTTCCATCTGGAAAATTCCATTTTTCATTGGGCCATTCATTATTAACttcaagaaatatttctttaCGGCAAGGCGTTTTTACGACAGAGCTGAGGATCATTAGATCATTTCTAGATTTATTTAAAGCACTAGAACGCCTTCTATTTTGAAGACCGTGTCTTGCTTTATTTgac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10373 all species →	EST1_DNA_bind	Est1 DNA/RNA binding domain	Repeat	Interproscan
PF10374 all species →	EST1	Telomerase activating protein Est1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045153 all species →	Family	Est1/Ebs1-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018834 all species →	Domain	DNA/RNA-binding domain, Est1-type	Interproscan
IPR019458 all species →	Domain	Telomerase activating protein Est1-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15696 all species →	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14409	SMG7, EST1C; protein SMG7	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.