Gene detail

Detailed information of XP_073243289.1 in Porites lutea

Genomic Location: chr5:40531793...40537348
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073387188.1

ACAAAGATGGCTGCCGAGAAGTGTGCGGAAATTGTTCAAAGAATTTCAATTTCATCTGGCCAAGAACTGATGGCAGCCTTACAGGACCTCAGTGCGCTTTTCAACAGCCCTTCCTTCAGTCTTAGGGAGTTGGTACCCCACATCCCGGTACATTTGCTTTTCGGGTGTTTAAGCGCTAAAAACGAAGAACAAATTGATGTGTGCAAAGGAATCCTAaagaaactgctgtctttggaAAAAGCAGACGCAGTCATAACGCAGTACCACGACTTTGTCATCGAAGGAATGAATCATCCAGTGTTTGAAGTCCGTGAGCTTTGTTTGAGTGAACTGGAAAGATGTTCTGCTACAATAAATGGGCTTGAAGCTCTTCTAGGCAACGTTGATGTCCTGGTTTACACCGTTCGTGCTCTGAGCGATGAGAACCTTTCCTGTGCAAAGTTAGCTACAAAAACTCTGGTCAATACCGCTAAACATGATTCAGGACTCGAACTTTTATTTCAACACCAGATTAAAAGTGAATTCGAGGCCCTTCTGTTGAAAAAAGATGTCATTCGCTTCAGAGTATACGAGTTGATAGTCACTATCCAGGCTTTGTCTGACAGAGCCTTTGAATACTGCAAAAGGTGTGGAATCCTGGAGAAGCTTGGAAAAGAGCTAGATGGTGATGATATGTTGCTCCGTTTAAACTGCATTGAACTACTAACACAGATGGCTGATTCAGGGAAAAATGGTCTGATGTTTGCTGAAGAGATTGGTGTAGTCAAAAGGCTGTATAACCTTTTACTAAGTGGTGATGCTGACCCTCTGATGTCTCTTATGTTACCAAGCATCATCAGGTTTTTTGGCTTTCTAGCTCAATCCAGACCAGTGGAGGTGACAGAGCAGTACCCTGCTTTCCTACAGAATGTTTTCTCCTTCCTGACAGCTTGTGATCCAGCACCTAAGCTTATTGCAATAGAAACAGTCGGTGCTATTTCACTGTCAGAGGCAGGCTTGAGGGTTGTCTTTGACAACACAATCTGTAATGACGAGGTGATGAAAATTTTGTGTTCGAACATCAGATCTTCTGATGCTGACATAAGAAGTAGATCATTAGAAGCACTGGTATCTATATTTTATTCACCCAATGTTCCTTCTGATGAGCTATCGTTGCTTGCAAAGTCGCTCTTCACTGCCATGACGTCGAATCCACTGCAGACCCTTTTGGACCTTTCCAGACAACCTTTTGAAGATGTCCATTGTGCCGTGTTGAAGGTGTTTACAAGCCTTGCTAAGTACAAATGGGCTCAAGAACACATGACAACGTGTCCAGgTTTCCTGGAATACCTGATGGACAGGAGTACAGAAACTGACAAAGCTGGCAAAGAGCAGAAGTATGAACTTATCGTAGCACTTTTGCGGTCTCCATTCTCCAAGGAAACGTTTGAGAAGCCGTTTCATTTGCGACTGCGTGAATATGAACGCGAAGGTCCATTCTACGTCCGAGTACAGGCCGCTGTAGCCTTCGAAGGAGCAGACTAGAACAGCTGTGCATTGAACGCAGCTTGAAGACATTCTTGACTTCGATAGCTTGACTGTGATATTtatacaaatttattttaaaaaaggtactTAATTTACAAGACAAAAACACTGAAAGAACTTTAAGCAAAAATcgataacaattttgaaaaagaaggtACTAGCTGCTAGAATGAGATCATATAATGATTGTAGTACAAAGCATTGTTAGCAGTGTTTTAAACTAAGTCTAATAACTATTCGAATCAAGCATGCTCTCCAGACCAAACGTgatatttggttaaaaaatccTGCTGACGACATTAGCATTTAGCTACAGTTTTTAAAACTCATCCAAAAAGTCACTCTCATTGCTTTGTCACCATGATTAAGGGTGGGATTTAACATTAACGCTTGAAATCCATAGAGAGGACAAAAAGACAAGGCTCACGAACGCCTTCAATGATTTCATCTtagttttaatcctttaaagAAGACGACAGACTGTTTCTTAAGCAAATTAAAGGGTTGTTGAAAGTATGTAAGGTTGCCCTTTTTGATTATTCACAAAATACGAAAATGAGTTTCTCAGAAAGAACACAATCTGACCCGACTTAACAATCTGACTTAATAAACACTGAAtctatattttttcaaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10508 all species →	Proteasom_PSMB	Proteasome non-ATPase 26S subunit	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019538 all species →	Family	26S proteasome non-ATPase regulatory subunit 5	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13554 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043248 all species →	Biological Process	proteasome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06692	PSMD5; 26S proteasome non-ATPase regulatory subunit 5	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.