Gene detail

Detailed information of XP_073243326.1 in Porites lutea

Genomic Location: chr5:28441866...28450109
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140937666

ATGCCGAGCAATACACCAGGAAAACGAGTAGAAGGAGGTGATAAAGACAATGAACAGAAAGATTGTGAACTTCCTACAAAACCAGTCGTAGTATTTGAAGGAAATGAACATGTTTCGGAGTCGGACGAGAACAGTGGAAATGAAGCCGCCAGCCTTTATAGCCGCGAAGTTACCAAGGAAATTCGGCGGAGAAGAAATACTATCGTGAACTCTTTTCGACTGGCTGAACTGGTTCCAACCACAAATACTCCGCATTCACAGTACCGGCGAAAATCCATTGTAATTTTGACAACAGAAACAGTGATAGACACAAAAGCTGAAGAACACTTTTTTGAGGGCTCAAGTCTAGCTGAAAGGAATGAACACAATCAAGCCATATCTTGTTTCAACAAGGCTATTTCTCTCAAACCAGAAGTTGTTAAAAATTATATTTCAAGAGGAGAAAGTTACTTGCAGATCTGTGACTTTCAATCAGCAATTTTAAACTACAAGAAAGCATGTATATTAGACCCAGACAATGATCAGACATATTCCAGATTAGCATTTCTGTACTTTCTTCAAGGACAATGTTTATTTGATGAAAAGCTTTACGGAGAGGCTTTGGAATCTTTTTCAAGAGCTGCAGAAATGAAGCCAGAGGTGATTGGCTATCATACCAGAAGCGTGGCTTGCCTGGCTGCTCTTCAGCGACATGGAGAGTGTTTGGCACTTGTGAATAAAAGACTTGAGGAAGAAACTGAGAATCCTGACCTGTTTATTATGAGAGCCAGACTTCATGAGCTTTTCCGAAATTCCACACTTTGTTACTATGATGTTAAAGATGCGTTAGCACTTGCCCCAGATAATGCAGAAGCCAAGTCTCTGATGGCCTCACTGGAGAAGAGAGCAAAGGATAGCAGACAGCAGGCCATACAGCTGCATTTGCTGGGGAAAGTTAAAGAGGCTTTGTCTAAAATCTCCATTGCCATAGAAACAAATCCATCAGTGGCGGATTTTCATGTCTTTCGTGGTGCTCTTCACAGAAGACAGGGTGATTTTAATGCTGCAATAGATGATTATCTTTTAGCCATGGACAAGACAGACCATGATGAATTTAACACTACGTACAAAGAAGCTCAGAGACAGCTTTTACTATGTTACAACGACTTTGCTGTTGAGTGTTTTAGTAAAGGATTTTATGATGAAGCTGTAGTACTGTTAAACAAAGCTATCAAAGGAGAAAAGAAAGAAAAGGGACTCTACATCAACAGAGGAGACTGCTTCTTTCGCCTGAATGAGCTTCACTTTTCCCTGTCAGACTATCAACAGGCATTAGAGATGGACAGCAGTGATTGGTCTGTCAGGTGCCGACTTTCCATTGTGTATAACGAGTTTGGAATACTGGAGTATTATGATAGGCACTACCTTGAAGCTATTGATCACCTTACAACATCCATCCAGTACAATCCTCGGATAGGTGCCTATTACTTGTCACGTGCCAGGGCCAGATACATGATAGAGGACATGGACGGTGCTCGGCACGACGTTCTCGTGTCGTTGTATTTAGACCCCGAGAACAAGGAAATCGTGTCCATTTTTTCGAGGCTGTTCCCGGGCCGAGCCATTACTGACGTCATGAAGAGTCACATGGGAATGGCGGCTGCACGTCAGGCCGAGGCTTCCATTCGAGAAACAAGTAGTTATCTGCAACTTTCCCAGCATGCCACAGGTGCGAAGAATTCTGAAGCAGCAGCCAAGTTTAGTGGTAAATCAGTTCTTCCACCGATTAGAGGTTCCGTGTTTCCTGAAGTGCGCGCATGTATGGAGGAACAAGATTTTCACATCAGCATCATTAAAGGAAAGAAAAAGGCCACCAAAATAGTACAAAGAGCTTTGAGCGCTCGTCAAGATCTGAGTTTCAAGGGTCCAAGGGTCCAGTCCAAGTTCAACAGTTCATCGGTACACGCGGAAAAAAGTGTAGTAAAGTTTGATGGCTTGACTGAGAAAAGAGCTAAGGATCAAAAGGCCTTGGTTCAGCTCGCCTAA

Transcript

rna-XM_073387225.1

acaaaacaaaatggcttcCGTGCTGCAGCGTAGATCAGTGGCGTGAAAATAATTGCAGATAAAAACACTTGATTCCAACAGATGCCGAGCAATACACCAGGAAAACGAGTAGAAGGAGGTGATAAAGACAATGAACAGAAAGATTGTGAACTTCCTACAAAACCAGTCGTAGTATTTGAAGGAAATGAACATGTTTCGGAGTCGGACGAGAACAGTGGAAATGAAGCCGCCAGCCTTTATAGCCGCGAAGTTACCAAGGAAATTCGGCGGAGAAGAAATACTATCGTGAACTCTTTTCGACTGGCTGAACTGGTTCCAACCACAAATACTCCGCATTCACAGTACCGGCGAAAATCCATTGTAATTTTGACAACAGAAACAGTGATAGACACAAAAGCTGAAGAACActtttttgaGGGCTCAAGTCTAGCTGAAAGGAATGAACACAATCAAGCCATATCTTGTTTCAACAAGGCTATTTCTCTCAAACCAGAAGTtgttaaaaattatatttcaagaGGAGAAAGTTACTTGCAGATCTGTGACTTTCAATCAGCAATTTTAAACTACAAGAAAGCATGTATATTAGACCCAGACAATGATCAGACATATTCCAGATTAGCATTTCTGTACTTTCTTCAAGGACAATGTTTATTTGATGAAAAGCTTTACGGAGAGGCTTTGGAATCTTTTTCAAGAGCTGCAGAAATGAAGCCAGAGGTGATTGGCTATCATACCAGAAGCGTGGCTTGCCTGGCTGCTCTTCAGCGACATGGAGAGTGTTTGGCACTTGTGAATAAAAGACTTGAGGAAGAAACTGAGAATCCTGACCTGTTTATTATGAGAGCCAGACTTCATGAGCTTTTCCGAAATTCCACACTTTGTTACTATGATGTTAAAGATGCGTTAGCACTTGCCCCAGATAATGCAGAAGCCAAGTCTCTGATGGCCTCACTGGAGAAGAGAGCAAAGGATAGCAGACAGCAGGCCATACAGCTGCATTTGCTGGGGAAAGTTAAAGAGGCTTTGTCTAAAATCTCCATTGCCATAGAAACAAATCCATCAGTGGCGGATTTTCATGTCTTTCGtggtGCTCTTCACAGAAGACAGGGTGATTTTAATGCTGCAATAGATGATTATCTTTTAGCCATGGACAAGACAGACCATGATGAATTTAACACTACGTACAAAGAAGCTCAGAGACAGCTTTTACTATGTTACAACGACTTTGCTGTTGAGTGTTTTAGTAAAGGATTTTATGATGAAGCTGTAGTACTGTTAAACAAAGCTAtcaaaggagaaaagaaagaaaagggacTCTACATCAACAGAGGAGACTGCTTCTTTCGCCTGAATGAGCTTCACTTTTCCCTGTCAGACTATCAACAGGCATTAGAGATGGACAGCAGTGATTGGTCTGTCAGGTGCCGACTTTCCATTGTGTATAACGAGTTTGGAATACTGGAGTATTATGATAGGCACTACCTTGAAGCTATTGATCACCTTACAACATCCATCCAGTACAATCCTCGGATAGGTGCCTATTACTTGTCACGTGCCAGGGCCAGATACATGATAGAGGACATGGACGGTGCTCGGCACGACGTTCTCGTGTCGTTGTATTTAGACCCCGAGAACAAGGAAATCGTGTCCATTTTTTCGAGGCTGTTCCCGGGCCGAGCCATTACTGACGTCATGAAGAGTCACATGGGAATGGCGGCTGCACGTCAGGCCGAGGCTTCCATTCGAGAAACAAGTAGTTATCTGCAACTTTCCCAGCATGCCACAGGTGCGAAGAATTCTGAAGCAGCAGCCAAGTTTAGTGGTAAATCAGTTCTTCCACCGATTAGAGGTTCCGTGTTTCCTGAAGTGCGCGCATGTATGgaggaacaagattttcacaTCAGCATcattaaaggaaagaaaaagGCCACCAAAATAGTACAAAGAGCTTTGAGCGCTCGTCAAGATCTGAGTTTCAAGGGTCCAAGGGTCCAGTCCAAGTTCAACAGTTCATCGGTACACGCGGAAAAAAGTGTAGTAAAGTTTGATGGCTTGACTGAGAAAAGAGCTAAGGATCAAAAGGCCTTGGTTCAGCTCGCCTAATAACCGACCAAGACACTGTGAAAGCTTCTTTAGATCGAGTACGTTGCTTCTCATTTAGGTATATCTACGTGTAACATCCTAAAAAGACTTTTCTTTGGTACTAGAAGTTTCTCTACTTCTAAGCGGTTACATCCTTATTTCATTGCCAAAATTCGGAAAACTACAACTTACAGAGGTGAAACACGTAACTTAGGTATTAACGCTCTTTATGAACATTCCTCGTTGGAGAGCTGCggaattagaaaaaaataaaggttctagtgaaaaatgtgtaaaaatgtaaaaatatgcGAAGAACGAAAtagtatattgt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007692 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45153 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073243326.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.