Gene detail

Detailed information of XP_073244091.1 in Porites lutea

Genomic Location: chr5:42888016...42903573
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073387990.1

GCGAGTGAGTGAAGAAGATGGCGGATCCATTGTCGCTTCTTCGCCAGTACAACATCAACAAGAAGGAGATTATAGAAAGGGCAGATGAAATTATATTTGACGAGTTTTCATTCTTGAGGGCTGCAAAAACGAATTATGTCATCTTCAAATCCCAGCCGAAGGAGTATTATACCTTGGAGTCTTTGTTATTCCTTTTGAAGAATGTTCACTTATCTCATCCAATCTACGTACAGCGTGCAGCGGGAACAAAGATTCCTGTTGTGAGGTTACCAGACAGAAAGGGATTACTCAGCTACCTCAATGGAGAGACAGaTACCTCAAGTAGCATTGACAAAAGTGTTCCACTAGAGATGCCAAACCAGCGCTCTGCAATTGCTCAAGCACAAGCAAAAAGACCAGGAGACGATGCAGTTGGTGGAGAGTTTAAAAAGCCAAGAGTTGAGACAGAACAGTTAAGACTGGATAAGAAAAGGTTGGAGGCTCGACTTGAAGGGCACAAAGAGGGTACTGTCACCACAGAGCAGATCCGGTCCCTGAGTGATGCTATGtctgttgagaaaattgcaGCCATCAAAGCCAAGCGTCTGGCAAAGAAACGGACAACCATTAAAGTGGATGATGACCTGGAAGCAGGCGTCTTGGAACAAAGATTTTTTGTGGATGCAGAAGTTGACGTAACAAGAGACATTGTTAGTCGTGAGCGGCCTTTACGAACACGGACTTCAGTCCTGCAAAGTTCTGGCAAGCAATTTCTAAAGAATGTGCTAGCCATTCTTCAATCAGTGAAAGCCCAGGAAGAAGGAAAAGTCAAGCAACTACAAAACCAGGATCCCTTTTCTTCTGCTGAAGCCAGGAAGAAGCCAGCAACACCAGTTCCATACAACAGATACGATCAAGAGAGATTTAGAGGAAAAGAAGAAACTGAGGGATTCAAGATTGACACCATGGGAACATATCACGGTCTCAGTTTAGAGTCTGTGAAGgaGGGTGTCCAGAAGCCAGCAAGGAGAGTCTTACCCAGTCCCTCACCTCATATACAACCCAGCCGGACACCCAGACCTGTTCCACAAAAGCCTGCTAAACGAGAATCACGCACACCAATAATTATAATCCCAGCTGGCACGACCTCTCTGATAACACTTTACAATGCTCAGGATCTTTTACAGGATTTCAAATTTATTAGTtctgaagaaaagaagagccAAGGTGCAAGACGTGAAAATGAGGTTCTTATTCAGCGAAGGAAAGAAATTCATCAAGCGCAAGCTGCACCTGGGGCCACACCCACTACTGTGACTGTACCATACAGGGTTATAGATAACCCTACACGTCTACAACCTAACGACTGGAATCGTGTGGTAGCTGTATTTGTTCAAGGGCCTGCATGGCAGTTCAAAGGATGGCCATACACCTCACCAGTCGACATTTTCACCAAAATGAAAGGTTTCTATCTAAAGTACGATGAAATGAAGACAGACACTAATGTGCAGAAATGGGATGTGCAGGTGTTAACGATCAGCCGAAATAAAAGACATCTGGATAAAGCCTCAATCATTCGATTCTGGGAAATCCTAGACAAATTCATGACCAAGCACAAATCACACTTACGCTTTTAAACTGCCAATCATGTCGACAGTTTTTGCCGCGTAACTGCGGTTGGTTTACAGAGAGGATAAAGATGTCTCTCAGTTAAAACCTGTGGCCGGCCTAATAAAGTCTACCAGTTAAGCATTTAACGGTAATTTCAACGGACACATCAGTAGTTTTATTTACATACGTCGGGACAAATACTAACGTTATCATGCTAGCTCGTAGTGGATGGCAAAATGCAAACAGCGAGCGTAAAACAAGACAGTGGATTATTAATTTAATGCTAGTGAAGAGAGTCCAACGAAGTTTTTGGATGATGGTTCTATGCAATatactttatttgtaaaagttgACTTGTTTGTATAAGGCCAGCAATGCTATACGAAGAAGTTACTGAGATAAAATGTATATGATCCGATATTGTACGCGATAGGAATTATTATAACTACATCCTTACTCTATGCTATTAGAGAACTTTAGTTTCAAGGACGAGATTTGACTTGCGGCGTATTCGCAAAAAGGAAACACctcggaaagcttcattgcacCTTTTTTCACCTTAAAAACTAGCACCATTATCTTATTTTTAGGAGATTAAGCCTTCTACCGTTCGGAACTTCTAttatttgataacttgtttccgccactacaacattctcgctaaaacccgtGGTAGGACGACGGCTATTaagttttcccgccacaatgacgCGGTTTCACGCGCGAGCGCTGCTTAgttttgagaaaatctcgttctcgtctTCTCGCAGTCTCTCTCATCTTAGAACCCAAAGGTCTCTACTTTGGTAGCTAGCGCAATGAATACTTCTTTATGAAGATATTGTTTTCATGCCTATTATGTACCATCATGAACGAACGAGCTGCGATGTGGTATTAGGTAAAGGAGCGGATAGATAAACGTACCTTAGGAGTACCATTCAAGAATTATTCTGGAAAAAAGCCTGGAAATCATTTTGGTGAAACCAAGCTCCATTCTTTTTTTGGGACATCGACCATCGTTGACTAACGTATCTGGGCAAGTATAAATCGTCCTAATCCATGACAGGTTCTTACAGAAAAACTAAGGTGGGTTCTAAAATTGGTTGGTCAGCATTTTGATCATAAAATGCTCAGTTTAACCGAACTTACTTGAAACCGGCCAAGACAATGGACCTGTTTGGCCGGTGAAAAGTCAGTTTTACGCATGAACGTCCCAATCGAAATTCCGGTCTCTGTAAATTTCAAGCCAGTTTGAATATTGCCttaaaaacagccaacatttcgcaACGCCACCAGCTCCAGTGGCAtgtttccccgcaaaatgacgtgTAAAAAACGAGCGAAGAATTTTCCATACTGATCTgagtagtgacgcgtcatcagcatAACATTTCTGCGCTCGCTTCTCCGACGTTATTTCGCGGGGAACTCGCGAAATGCCggctattttctcaggctagtttAAATAGCAAAGGATTTTGCTCAACATTTCAATCAATTCAATCTATGATGCTATGTAGTAAAGTACATGTGTACGTCACTTGAATTGACTTGTCTAATAAAGATTCTTTCGTACCACGTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16050 all species →	CDC73_N	Paf1 complex subunit CDC73 N-terminal	Family	Interproscan
PF05179 all species →	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007852 all species →	Family	Cdc73/Parafibromin	Interproscan
IPR038103 all species →	Homologous_superfamily	Cell division control protein 73, C-terminal domain superfamily	Interproscan
IPR032041 all species →	Domain	Paf1 complex subunit Cdc73, N-terminal domain	Interproscan
IPR031336 all species →	Domain	Cell division control protein 73, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12466 all species →	CDC73 DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0034402 all species →	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15175	CDC73; parafibromin	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.