Gene detail

Detailed information of XP_073244127.1 in Porites lutea

Genomic Location: chr5:43187681...43215185
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140938543

ATGGAGATAAAGTCTGGAAAAATGGTTTTGAAAACAATGGATTTTCATGGTCATCGTCGTTACCATCCTTACACCCCTCCCGTAGGTGCACATCGTGGGAGAAACCAACCGTTGCCAAATGGACAAACTGGGGCATGGAATGGTCGGTATTCAAGTGTGCACAGAGGATTAGGATCTCAGCGTTCACTAACCAGAGGCATGTTCCATCACCCACCAGAGCATAGTTCAGTCAGTACTAATAAAACACCCTTTTATCCGAGATACCCGGGGCCACAGCCAAGACTTTCATGGTTCCAAGGTAGATCAATGCATTATGGGGTACCACGCCCACCAACCAACTATTACTCTGAACAAAGAGAGAGAAATTTTAGATGGCCCTCTTATAGAGCAGCAAGATATGGGCCCTACCCCAGGCTGCACCCCAAGCATATGGGAATAGCCAGTTCCTACTCCACAGGTCAGACAAACGAACAAGGAAATACTACTTCAGAAAGTCCACACAAGATAAAGCCAGGAACGCGTTTGATCTCTTCATGTTCTCAACAAACAAATGTTAGTACAGCACAGGAGCAGAAAAACTTGAACTCTTCTGTAACTGGTGAGGCAGTATCTTTGGATAAAAAACGTGCTACTTCAGATGGCAAAACCCCCTCTGTTGCTAAGGTTGTACCATTCAGTCATCAGCCTTCTGTAAGTGCCGTCAAATGTTCAGCAAGTACTTGTTGTTCTTCAGTAACATCCACTGTTTCTGCTGCTACAAATACTCAGATCCAGCAGACAGTTGCACATGAACAGAATAGTATGCTGCCGACTTCTGTTGACATTTCGGAGTCTCAATGCCCTGCTCCAGATGGTGGTATTATGACCGTCTTTGCACATTTTGAAGATGGTCAGGTGCGTCCTATTATGAGAACAATTTGTAGCTGCCAGCTACGTAAACGAGCTTTAAAGTATGCTGATAAAGGAAAAACTAAAACTGACTCCATTGTTCTTGATTCTGATGAGGAAGATGAGAAGAATAGTGTGGCTGCTGGTTCTGTTGGTGATCAAGAAGCAGGGAAACCTCTGTCAAGTTCAACTTCTGCTGGTGATAAATTAAGTGGCGGAGGGGAAGGCAATATTCAAGACACACCCAGGAAAAGAGCAAAAATGAGCATAGAAAACCCAGAAAAGAGATCCTCTCCTGATGAGAGCAGCTCTCAAACTATGATAGAAATGGATGTTTCAAGTAGTGTTATATGCTCTGAGTCAGTGGCAGACTCAGTAGCAAGGATTGTGGATGGCTTGCGACACAGTGTTGGCGAGGGAAACAGTAGTTGTGCCTCTTCAGATTCCCTGTCTTCATTATCATTTGCAAGTATTACAGAGGATGCCCCACTCCTTGCTAATCCCCAGATTCTGCGACGAATTTTGGATGAATGTAATGGGATAGATAAACCATTTAAGAAGTTGAAAGTCTCACCGATGAATTTGTACACAGCTGCTAAAGACTGCAATGTTCACAAAGTTCTTGCTTTGTTAGTTGGAGGATGTGATCCAAACCAACAAGTTGTTAAAGCCAAAGGAAAGACGGCCATGCATGCGGCAGCTGGTGGTGGATATGTTGATATCATGGCTTGTCTGAGACTGGCAGGATGTGATTTGAACCTTGTTGATTATGAAAACAGAACACCTTTTTTTGATGCAGTTAGTAATCACAAGGTGCAAGCAGTAGAATATCTCATTGAATGCGGTGCAAACGTCAGAGTCAGGGACTCCAAAGGTATGACCTGTTTCCATTTAGCTGTTCGTCAAGGACATACAGATTTAATCAAACTCTTGTTGAAGACAGGACAGTTTGATATCAATGAAAAGGATGATGGTGGATGGACTCCGATCATGTGGGCAGCGGAGGATAAACAATATGAAGCAACCCAGCTGTTAATGGAGTGTGGAGCTAATGTTCACTCACGTGACCTGGAGCTTAATGTTCCCCTTCACTGGGCAGCTTTTTCTGGAAGTGCCGAGGTGTGCAAACTGTTGCTTTCGAATCATGTGAATATAAACACTGTGAACGAACATCTTGAGACTTCACTCCATATCGCTGCAAGAGACAACCACTATCAGTGTGTCCAGTTGTTTCTAAGTCGAGGTGCAGATATTCATATCAGGAACAAAGACGGCAACACGCCTGCTATGGTTGCTGATCCTGATTCTAGAGGTTATAGTTTACTGAAGGCAAAAGAAGATTTAGAGTCTCGTCAACATTACATCCGGCCACGCATTTTACATTGCGATATTTCTCGTGGACAGGAAAATGTTTCAATATCTTGCATAAATGAGGTCGATGACGAACCGTTTCCAGAATTTACCTTTATCAAGGAATGCTTCGAGACTAAAAGAGGGATGATAGACTGGAGTATTTCAAGATATGAGGGCGGCTGTAGCTGTGAAAGAGTATGCCAAAGTGGAATGCTCTGTCTCTGTTCTAAAAGAAGCGAAAGACAGAGACTTTGGTACGAGGAGGGGCTAGTTAAAACTTCTATCAAGAACATTGACCGGCCGCTGGTTTACGAATGTAACAGAATGTGCAACTGTTGGACGTACTGTAAGAACAGAGTTGTACAGAAGGGAATGCAGTACCCACTGCAGTTGTACAGAACCCGGAGAAAAGGTTGGGGAGTGCGCAGTCTTGCTAAAATTCCAAGAGGTTGTTTTGTCTGTGAGTACACTGGTGAACTGATATCGGACAGTGAAGCTGATGCGCGCGATGACGACTCCTACTTATTTGACTTGGATTGTAAGGAAAGTTCAAATGAGAATGAGTTGTTCTGCATTGATGCAAAGTACTTTGGAAATATAAGCAGGTTTATAAATCACTCGTGTGAACCAAACATATTTCCGCTGCGGGTATTTGTTAATCACACAGACATAAGATTTCCCAGAATAGCATTCTTTGCTATTGAAGACATCGATGTCCATGAGGAAATTTGTTTCAATTACGGTGATAAATTCTGGTCTGTTAAGAAGAAGGAGTTTTACTGTGAATGTGGCACCACAAGCTGCAAGTACCCCAAACCCAGCAGTTAG

Transcript

rna-XM_073388026.1

ATTTAATGAGACTGAAAAGAGTGCCTTAACATTTATTCTTGGCAAGTTTGAAAGTACAGGGTTCATACAGCAATTATTTCTAGACCTGggaaaagtctggaaaatggagataaagtctggaaaaatgGTTTTGAAAACAATGGATTTTCATGGTCATCGTCGTTACCATCCTTACACCCCTCCCGTAGGTGCACATCGTGGGAGAAACCAACCGTTGCCAAATGGACAAACTGGGGCATGGAATGGTCGGTATTCAAGTGTGCACAGAGGATTAGGATCTCAGCGTTCACTAACCAGAGGCATGTTCCATCACCCACCAGAGCATAGTTCAGTCAGTACTAATAAAACACCCTTTTATCCGAGATACCCGGGGCCACAGCCAAGACTTTCATGGTTCCAAGGTAGATCAATGCATTATGGGGTACCACGCCCACCAACCAACTATTACTCTGAACAAAGAGAGAGAAATTTTAGATGGCCCTCTTATAGAGCAGCAAGATATGGGCCCTACCCCAGGCTGCACCCCAAGCATATGGGAATAGCCAGTTCCTACTCCACAGGTCAGACAAACGAACAAGGAAATACTACTTCAGAAAGTCCACACAAGATAAAGCCAGGAACGCGTTTGATCTCTTCATGTTCTCAACAAACAAATGTTAGTACAGCACAGGAGCAGAAAAACTTGAACTCTTCTGTAACTGGTGAGGCAGTATCTTTGGATAAAAAACGTGCTACTTCAGATGGCAAAACCCCCTCTGTTGCTAAGGTTGTACCATTCAGTCATCAGCCTTCTGTAAGTGCCGTCAAATGTTCAGCAAGTACTTGTTGTTCTTCAGTAACATCCACTGTTTCTGCTGCTACAAATACTCAGATCCAGCAGACAGTTGCACATGAACAGAATAGTATGCTGCCGACTTCTGTTGACATTTCGGAGTCTCAATGCCCTGCTCCAGATGGTGGTATTATGACCGTCTTTGCACATTTTGAAGATGGTCAGGTGCGTCCTATTATGAGAACAATTTGTAGCTGCCAGCTACGTAAACGAGCTTTAAAGTATGCTGATAAAGGAAAAACTAAAACTGACTCCATTGTTCTTGATTCTGATGAGGAAGATGAGAAGAATAGTGTGGCTGCTGGTTCTGTTGGTGATCAAGAAGCAGGGAAACCTCTGTCAAGTTCAACTTCTGCTGGTGATAAATTAAGTGGCGGAGGGGAAGGCAATATTCAAGACACACCCAGGAAAAGAGCAAAAATGAGCATAGAAAACCCAGAAAAGAGATCCTCTCCTGATGAGAGCAGCTCTCAAACTATGATAGAAATGGATGTTTCAAGTAGTGTTATATGCTCTGAGTCAGTGGCAGACTCAGTAGCAAGGATTGTGGATGGCTTGCGACACAGTGTTGGCGAGGGAAACAGTAGTTGTGCCTCTTCAGATTCCCTGTCTTCATTATCATTTGCAAGTATTACAGaGGATGCCCCACTCCTTGCTAATCCCCAGATTCTGCGACGAATTTTGGATGAATGTAATGGGATAGATAAACCATTTAAGAAGTTGAAAGTCTCACCGATGAATTTGTACACAGCTGCTAAAGACTGCAATGTTCACAAAGTTCTTGCTTTGTTAGTTGGAGGATGTGATCCAAACCAACAAGTTGTTAAAGCCAAAGGAAAGACGGCCATGCATGCGGCAGCTGGTGGTGGATATGTTGATATCATGGCTTGTCTGAGACTGgcAGGATGTGATTTGAACCTTGTTGATTATGAAAACAGAACACCTTTTTTTGATGCAGTTAGTAATCACAAGGTGCAAGCAGTAGAATATCTCATTGAATGCGGTGCAAACGTCAGAGTCAGGGACTCCAAAGGTATGACCTGTTTCCATTTAGCTGTTCGTCAAGGACATACAGATTTAATCAAACTCTTGTTGAAGACAGGACAGTTTGATATCAATGAAAAGGATGATGGTGGATGGACTCCGATCATGTGGGCAGCGGAGGATAAACAATATGAAGCAACCCAGCTGTTAATGGAGTGTGGAGCTAATGTTCACTCACGTGACCTGGAGCTTAATGTTCCCCTTCACTGGGCAGCTTTTTCTGGAAGTGCCGAGGTGTGCAAACTGTTGCTTTCGAATCATGTGAATATAAACACTGTGAACGAACATCTTGAGACTTCACTCCATATCGCTGCAAGAGACAACCACTATCAGTGTGTCCAGTTGTTTCTAAGTCGAGGTGCAGATATTCATATCAGGAACAAAGACGGCAACACGCCTGCTATGGTTGCTGATCCTGATTCTAGAGGTTATAGTTTACtgaaggcaaaagaagatttaGAGTCTCGTCAACATTACATCCGGCCACGCATTTTACATTGCGATATTTCTCGTGGACAGGAAAATGTTTCAATATCTTGCATAAATGAGGTCGATGACGAACCGTTTCCAGAATTTACCTTTATCAAGGAATGCTTCGAGACTAAAAGAGGGATGATAGACTGGAGTATTTCAAGATATGAGGGCGGCTGTAGCTGTGAAAGAGTATGCCAAAGTGGAATGCTCTGTCTCTGTTCTAAAAGAAGCGAAAGACAGAGACTTTGGTACGAGGAGGGGCTAGTTAAAACTTCTATCAAGAACATTGACCGGCCGCTGGTTTACGAATGTAACAGAATGTGCAACTGTTGGACGTACTGTAAGAACAGAGTTGTACAGAAGGGAATGCAGTACCCACTGCAGTTGTACAGAACCCGgagaaaagGTTGGGGAGTGCGCAGTCTTGCTAAAATTCCAAGAGGTTGTTTTGTCTGTGAGTACACTGGTGAACTGATATCGGACAGTGAAGCTGATGCGCGCGATGACGACTCCTACTTATTTGACTTGGATTGTAAGGAAAGTTCAAATGAGAATGAGTTGTTCTGCATTGATGCAAAGTACTTTGGAAATATAAGCAGGTTTATAAATCACTCGTGTGAACCAAACATATTTCCGCTGCGGGTATTTGTTAATCACACAgaCATAAGATTTCCCAGAATAGCATTCTTTGCTATTGAAGACATCGATGTCCATGAGGAAATTTGTTTCAATTACGGTGATAAATTCTGGTCTGTTAAGAAGAAGGAGTTTTACTGTGAATGTGGCACCACAAGCTGCAAGTACCCCAAACCCAGCAGTTAGCGGAAGTGTCCAGGTGGCTCATCCTTCAAGCAGTCATCTTTTACACATCCTTTTTAAATGTATTCATTAACTACGCAAACACGACTGTACTCAGTCAATATAACAACTTTCATTCAGATcctattattaaaataatatatagtatGCTTTATACAACACGTCTTAGGAGTTTTGAGAACTCTGAGTTACTAAGAAGGTATTGTCTTCTCCTTAACAgtaagtaaaaaataaacctaTTGTAAAAATTACACAGCCACAGctcttattatatttttatacttcGGCTTTAACTTTGTCGTTAGGAagcttacgaaactacgacgacCATGGCAGTAACAACGTCCCTGATTAAGTGAATTTACTTTGTTCCAAACTTCATCGTGATTATTCCTACTGAACTCAATTTTTCAAGCGTTGTCTAATTATCCTGAAGTTTAATTGTGAAGCTTGGCTTCCATAAAATCTTTCGAATTCTCGATCTCCTCGATTGTTTGTACGATTGCAACGATCGAGGACGACCCCCCACGATTAAATGTAAACGAGAGGAAAGGAAACCCCTCCTTTATGTTTGCCTCCTCAAGAGGCCGTATTAGGACATTTCGCGTGGTAGACAAGGCAACGAAATGTTTCAAAAGTGTAAACTAGTGCAAGGggtgttgttttgctcatttaaccagtgttttttcctttgttgtggTATCGCAAGCTCCCTATATATGCCCGTCTGCTTTACAATTTGACATGTCAGTCTATATCTGAGTTGGATGGGATCCTGAAGGCTGGCATTTGTTGCTATAAATAGCACAATTTCAGGTCGTCTTATAGTCTCAAACACACgagtatttttcatttttcgaaACTTTCTTGTTGACTCCGACATGCATGTTTGCATTCTCAATCCACTTGCCATACAGTTATATACTGAAATTAAGTTCAATTAGCTATAAGGctctatttctttttaatacttgaaaagatttttacacggtttatcagttttatttcctttaattGTAAGATATGTTAATCTATATAAATATCTCCTTATTTATATTATAACGTTCTTCAGATATTTATATCACAGTTGTTTGTCTGTGTAAAAGATTGATGTGTGGGTTGATTTATGACTGGACTGCACAACATAACAGCTGCATTTTTGCATTGGTCTGTAGAACCCAGCACTAGTCAAACGAAACGTCTTGAGCAAGTGTGAATACGTCTCATCTCACGTGTCCCCATTATAAGGAAGGATAATCTAACATTTGTTTCGTGAAGCAAAACAGagcaggccccggttgttcaaatgttggacaGCGCTATTTGCCGGATAAATCACTGtgcagcggataagtattagagAAACTGATTTCGTAATCCGCTGGATAAAAAAACACAATAGAACAGATGGATGGACGTGATACTATTTCTGTTACTGAccctttttttagtttttcaaggGGTGACTTCCTATCTTCTCAAAGGTTCAAGTATTTTTTAGGCAATGCCTGCTATAAACATATCTTTTACTTAAATCGTGGATAGTAGTACGAGTGtaactttattttgtaaagtgTTTGTTTCGTTACTGTGTAACGcaaattggttttgttttgtaggACCTTTCGGAAAGCTTTTTACCTTTAACAACATGATATTTCTGCTCATGCGCTTGTTGTTATTCAATGACGCAGAAAGCTGGACTTTCTTTTCGGTGGACTATTCGGTGTGTTTGTTCATTGTGTTAAATGATACTTTTGAAAACTGATAGTGTGTAAAAAAAGCGCCTGGCTGTATTAGGCAATCTGTaaatataaacatttttcaTACAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001165 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05033 all species →	Pre-SET	Pre-SET motif	Family	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR043550 all species →	Family	Histone-lysine N-methyltransferase EHMT1/EHMT2	Interproscan
IPR007728 all species →	Domain	Pre-SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46307 all species →	G9A, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006306 all species →	Biological Process	obsolete DNA methylation	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018027 all species →	Biological Process	peptidyl-lysine dimethylation	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0046974 all species →	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051570 all species →	Biological Process	obsolete regulation of histone H3-K9 methylation	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →