Gene detail

Detailed information of XP_073244502.1 in Porites lutea

Genomic Location: chr5:27023781...27042336
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140938876

ATGGCGGCAGATTTGAGTCCAGCAGAAAAAGAAACTCTTGAAGCGCTTTTACAGAGCCTTCAAAGAGATATCAACTGTCTGGCAGATGACAACAGAGGGACAAGAAAGCGAGCCCTGGAAAAGATTAGCAAAGAAGTCTTTTCAAAGAAGTCAAAGTTATCTGCTTCAGTAATGAAAACTTTTTTTGAAGAAATTTTAAAGCCTGTTTTGAAGCTGTTTTCAGACCCAACTGAAAAATGCAGAGAGCTTTCTTTACAGATGGTTACTGAATTTGCTAAGCAAGTGGCGGACATGTCCCAGTTTCTTCCATATATAATTCCAACAGTGGTCCAAAGACTAGGCCAGCCAGAATTAGTTGAGCCTTGTGAAGAAATTAGACTTTCTACAGTGGAAATGTTACTCTCTGTCATTGAGATATGTGGTGAAAAAGTTGGTGTATATATCGATGACTTGATAAAAATACTTCAGAGAACTCTTGTTGATCCATTTCATGATGTAAGAAAGGAAAGTTGTCGATGCACAAATGTTTTAGCTGCAGCTGTTCCTGAGCAGTTTTATTTCCAAGCCAACTCACTTGTGACTCCTCTTCTAAAGTCTCTATCTCATCAACATTCTAAAGTCAGAGTTTCTTGTATACAGACGTTAGGTATTGTCATTAGCTACGGAGATGGCAAAAATGTGGATGATGTAGTTTCACATCTTGCCCAGAGAACATTTGACAGTGCACCAACAGTGAGAGCAGCTTTGACTGGTGTTATTGGTGACTGGCTGTTAAATCTTCGTGACAGATATTCATATTTCCATAAGTTACTGCCATTATTGATGACAGGCTTGTCTGATGAAATGCCTGATATTCAGAAGCAGGCAAGACAGCTCATGGAAAAGGTGGGTGAACAGTTTGCAGCAGAGAATGAAGATGATTTAAAAGACAAAATGGATTTTGAGGAAATCCCAGATTACAAGCTTTCGACAGGTATGACACGCCCCAGTCTGGGATGCAGGGTTTTAGTTCAAAGAAATTTGTCTAAGATTTTACCTGCTGCACTACGAGACATGGCTGACTGGACTGCTGACACAAGAGTTAAGGCTTCTTCTTTAGTTTATTTCTTGCTATTTTATGCTGAGGACCACACAACTCAACACATGGAAACATTGTTACAAGGGTTGTATAAAGCTAGCCTGGATGAAAATGAGCAAGTTGTTAGACAGGTTGTATCAAGTGCGGAGCTGGTTGGTAGTTTTGTTGATCCAGCAGTGTTTTGCAAGTTAGCTCTCCCTCATCTCAAGTCTGCAGCGGGCAGCTCTGCTACTGGTTGCAGTAGTTGTTTGTTGATTCTTGCGGCATTGATAAGGGGTTGTAATCCAGAGCTCCTTAAACCTCTTCTAAAGGACGTATGTAATACAATTTCTTTACAAGATGTCTGCTGCACAGAACAGTCTTCTTGTCAACAACATCTTTTAGCGACGGTTTCTGCCATTGTAGACAAGGCTGGTGAAGAGACCGGTGCACACAGTTTCACATTGTTCTACGTTTTATTACATGTGATGGCTCTTCAGCCACAAGGAAGTCTTCAACGAGAGGTGAATGTTGTGTTAACCAAGCTTGCATCAACGCAAAGATTGGAAAGTGTGTCAAAGCTGTATGAAAATCACATTCAGAAGTTCCTTGAGAAGCTTAAAAAGAACCATACCTCTTGGACTCATCATTCTCCAGAGTGTCGACTGTTTGATGTGCTGTTGTCAGAATCTGGACCAGTAGTTAGTGGGCACCTTACAGATGCCATGGACATCTTTACAGAGTGCTTAGACAGTCATAAGAAAGACCCTGAGCTGCGACTAAAGATGTTTTCCTTGTTGTCACGTCTTCTCATGAATGCTTCCCAGTCGGTGGAGTCAAAGAACGCTTTTAGCTCACATTCAGTGACTGTTGTACAGAAACTCGTTATTCCTAACTGTGTGTGGCAGGCAGGAAGAACTGCTGCCGCTGTCCGTTCTGCAGCTATCTCTTGTCTCTGGGCGTTACTTAACTCCAATTTGTTATCTTCTCAAGATGCCGCGCAAGTTATGAAGGATCTTCTTACTCAGCTTATAACTTGCTTGGACGACCATAATCAAACAACACGGCTTGTAACATGTAAAGCTCTTCAAAGATTACTGGTATCCTGCAAAGACACTTTTAATGTGGACATGCTTCACCAAATCTACCCCGAGTTACTGAAAAGAATGGATGACAGTAGTGATGAAATTAGGGTCGTTGTCACCAAAACCTTTCTTGCTTATTTTAGAGCGTTTCCTTCAAAGTACGACCACGACTTGTACAAGTTACATTTGGAAGCCATGTTTAAAGGTCTTCTAGTTCATCTTGATGACCCAACATCTTCTATACAGGAAGCAGTTCTCACTGTGTTAAAAGAAGCAGCACATGTGCAACCTCTCTTGTTGAAAGAACAGGTTGAGTCTGTTAGGCACAAGCACAGAGTGGCCAGATATTGCGAGGAGCTTATAACACATTGTCAAAGCCTTACAGCCAAGTCATAG

Transcript

rna-XM_073388401.1

CCCCTCCCCGTTAGTAATTGGTTTTGTCCATCGTTACCAAGATGGCGGCAGATTTGAGTCCagcagaaaaagaaactcttGAAGCGCTTTTACAGAGCCTTCAAAGAGATATCAACTGTCTGGCAGATGACAACAGAGGGACAAGAAAGCGAGCCCTGGAAAAGATTAGCAAAGAAGTCTTTTCAAAGAAGTCAAAGTTATCTGCTTCAGTaatgaaaactttttttgaagaaattttaaagCCTGTTTTGAAGCTGTTTTCAGACCCAACTGAAAAATGCAGAGAGCTTTCTTTACAGATGGTTACTGAATTTGCTAAGCAAGTGGCGGACATGTCCCAGTTTCTTCCATATATAATTCCAACAGTGGTCCAAAGACTAGGCCAGCCAGAATTAGTTGAGCCTTGTGAAGAAATTAGACTTTCTACAGTGGAAATGTTACTCTCTGTCATTGAGATATGTGGTGAAAAAGTTGGTGTATATATCGATGACTTGATAAAAATACTTCAGAGAACTCTTGTTGATCCATTTCATGATGTAAGAAAGGAAAGTTGTCGATGCACAAATGTTTTAGCTGCAGCTGTTCCTGAGCAGTTTTATTTCCAAGCCAACTCACTTGTGACTCCTCTTCTAAAGTCTCTATCTCATCAACATTCTAAAGTCAGAGTTTCTTGTATACAGACGTTAGGTATTGTCATTAGCTACGGAGATGGCAAAAATGTGGATGATGTAGTTTCACATCTTGCCCAGAGAACATTTGACAGTGCACCAACAGTGAGAGCAGCTTTGACTGGTGTTATTGGTGACTGGCTGTTAAATCTTCGTGACAgATATTCATATTTCCATAAGTTACTGCCATTATTGATGACAGGCTTGTCTGATGAAATGCCTGATATTCAGAAGCAGGCAAGACAGCTcatggaaaagGTGGGTGAACAGTTTGCAGCAGAGAATGAAGATGatttaaaagacaaaatggATTTTGAGGAAATCCCAGATTACAAGCTTTCGACAGGTATGACACGCCCCAGTCTGGGATGCAGGGTTTTAGTTCAAAGAAATTTGTCTAAGATTTTACCTGCTGCACTACGAGACATGGCTGACTGGACTGCTGACACAAGAGTTAAGGCTTCTTCTTTAGTTTATTTCTTGCTATTTTATGCTGAGGACCACACAACTCAACACATGGAAACATTGTTACAAGGGTTGTATAAAGCTAGCCTGGATGAAAATGAGCAAGTTGTTAGACAGGTTGTATCAAGTGCGGAGCTGGTTGGTAGTTTTGTTGATCCAGCAGTGTTTTGCAAGTTAGCTCTCCCTCATCTCAAGTCTGCAGCGGGCAGCTCTGCTACTGGTTGCAGTAGTTGTTTGTTGATTCTTGCGGCATTGATAAGGGGTTGTAATCCAGAGCTCCTTAAACCTCTTCTAAAGGACGTATGTAATACAATTTCTTTACAAGATGTCTGCTGCACAGAACAGTCTTCTTGTCAACAACATCTTTTAGCGACGGTTTCTGCCATTGTAGACAAGGCTGGTGAAGAGACCGGTGCACACAGTTTCACATTGTTCTACGTTTTATTACATGTGATGGCTCTTCAGCCACAAGGAAGTCTTCAACGAGAGGTGAATGTTGTGTTAACCAAGCTTGCATCAACGCAAAGATTGGAAAGTGTGTCAAAGCTGTATGAAAATCACATTCAGAAGTTCCTTGAGAAGCTTAAAAAGAACCATACCTCTTGGACTCATCATTCTCCAGAGTGTCGACTGTTTGATGTGCTGTTGTCAGAATCTGGACCAGTAGTTAGTGGGCACCTTACAGATGCCATGGACATCTTTACAGAGTGCTTAGACAGTCATAAGAAAGACCCTGAGCTGCGACTAAAGATGTTTTCCTTGTTGTCACGTCTTCTCATGAATGCTTCCCAGTCGGTGGAGTCAAAGAACGCTTTTAGCTCACATTCAGTGACTGTTGTACAGAAACTCGTTATTCCTAACTGTGTGTGGCAGGCAGGAAGAACTGCTGCCGCTGTCCGTTCTGCAGCTATCTCTTGTCTCTGGGCGTTACTTAACTCCAATTTGTTATCTTCTCAAGATGCCGCGCAAGTTATGAAGGATCTTCTTACTCAGCTTATAACTTGCTTGGACGACCATAATCAAACAACACGGCTTGTAACATGTAAAGCTCTTCAAAGATTACTGGTATCCTGCAAAGACACTTTTAATGTGGACATGCTTCACCAAATCTACCCCGAGTTACTGAAAAGAATGGATGACAGTAGTGATGAAATTAGGGTCGTTGTCACCAAAACCTTTCTTGCTTATTTTAGAGCGTTTCCTTCAAAGTACGACCACGACTTGTACAAGTTACATTTGGAAGCCATGTTTAAAGGTCTTCTAGTTCATCTTGATGACCCAACATCTTCTATACAGGAAGCAGTTCTCACTGTGTTAAAAGAAGCAGCACATGTGCAACCTCTCTTGTTGAAAGAACAGGTTGAGTCTGTTAGGCACAAGCACAGAGTGGCCAGATATTGCGAGGAGCTTATAACACATTGTCAAAGCCTTACAGCCAAGTCATAGTCTTAATTAGCTTCTTAAGAATCATTAAGATACTACCAAATGATGAGCCCACTGTTAGAAGCTGATTGCAAGACTATGACGAACTTAAATGATTACCCTTGTACATGTGAAGGAAATGAGGAGGCAAAGATGGACACTGTCAAGCAGCGTTTTGAGGAATACAAAACAGATACATGGTGTCAAGAACAAGCAAGTCTGCAGAGAACCATTTCCTTTAACGGTTACAAGTCTGAACTACGGCTGTTCAGGATTAAATGACAAAGCCTGTTTGtatcataaattattttaaagatttcAATGGAAACTTGCTTTTTAAAATTGCTATCAGACAGTCAGTGAGAAGGATGGAGATATTTGTTTCTTGTATTAACAGGTCTGGTTTTATGTTTGCATTTCTGTTAAAACAATAATTGAATTCCTAATGCATGTATTAGAAAACCCATACAAGAATCTCACCGAAAAAGGCGATAATCGTCTCTGCAGGAACACTGCTCAGTAGGTCAGATTTCAACAAAGGCCATTGTGTGATGTGGCAACATAGTTCTTTTTGACGTTCATATAGCACTATGaaaattattcaacaataaattatttccTTTCACTTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20168 all species →	PDS5	Sister chromatid cohesion protein PDS5 protein	Repeat	Interproscan
PF12755 all species →	Vac14_Fab1_bd	Vacuolar 14 Fab1-binding region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR052623 all species →	Family	Dynein Axonemal Assembly Factor	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16216 all species →	DYNEIN ASSEMBLY FACTOR 5, AXONEMAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0036158 all species →	Biological Process	outer dynein arm assembly	Interproscan
GO:0036159 all species →	Biological Process	inner dynein arm assembly	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19759	DNAAF5; dynein axonemal assembly factor 5	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.