Gene detail

Detailed information of XP_073245040.1 in Porites lutea

Genomic Location: chr6:34892080...34902221
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140940062

ATGAGTGAAAAAAATGTGCTCATCAGACAGCGGCTAATTGAACTAGAGAAGAAACATGCAAAAGCTTTGAAAAAACTTCAGAGAGCTGAAAAGTACAAGCAGAGGCGACAAACTTTTCATGGATTTACAGTTAGAGATGCAAACACTAGTAATTCAATCACTGTGGACAACTCTAACGTTCTTTTATCTAAGGACACAATCTCTACAGATGTTAGAAACGCACGGTGCTCATCAGCTCAAAAAAAGGGAGTTACTAAAACTGTGACATTCAAGGAAGCTCTTGACAGTGATAGTAAAGGTCAGCCTCGATCAGAGAATGAATGCAAAACTGTGGAGCAAAGTGACAGCAACAAAACATTTAACAGGAAATCTGAATTATTAGCTTCAAGTATTCCACAGCAAATATCTGAAGACAATGAAAAGGTGTTGCAGTGTTCGGTCAGCAGTGACAACAGCTTTGTTGCAGTAGATAGTAGTATGGTTACACCAACAGGCTCTCTTATTTCATCTGATAATGAAACAATTCTTGATAGTGATGTGGCTTCTACGGATGGGAAAGATTGTTTCCAGAGTCATCAAGGTGTAGACCTTAAGGCTATAGACAGTCGTCTCTGTGGCTCAGGACAGGGTGTTGTACAAGTACCTTCAGCAGGTAATGAAAGTTGTAACCATGAATTGTCGCAAAAGCAATGTCATTCTAATGGTCTGCTAGGGCAACATAATGCAAAAAATGTGTTAGCTCAAAGCAAAGAAAATGTCAAGATGAGGAATTCATCAGATCATCATAATGCACAAGATGATAGCACAAGACATACATGTAGCTTGGAAAAAGCAAATGACAGAGTGACTGTAATTGAAAATGGTGGCAAACATCAAAACGAATCAACCAGCAACTCATTCACCCTGGATAAAAGTGATTATTGTCCTTCAGGGAGTCAGCCCTGGTTATGGCTCTTTGAAGAACAGTTTCCAAGGAGGTCTCCACGGATACAATCAATGCCAAACTTCAGAGATCAAGCTCATTTTTCTCAGGATAACAAAGTTACACATGCAAAGAAAACAAAACGCATAAGAAAGAAGAAGTCAAGGACAGAGAATGATACTCCAATCAGTAGAAACAATAACTTAAAATCTACCACAGTACATGAAAATAATGGCAATTCACCACATAGCAGTTTTCCTGAAGAGAGTTCATGTATCAGCAATTTTGTTTTTCCAAGGCCTACTCAAGAACAAACAAAAAATGGTGGGTCTCTGGCTGTTGTAGTTGACTTTTCTCTACCTGATAGAGAGTTTGCAAAGCTGAAGCTTGCAAAAATCAAGGGAACTTTGTCAGCAGAAAGGTCAAGTAAAGACCTAAATACTGTAGTGGAAAAGATTACGGAAGAGCATGGTACTGAAGTGACGAGAGATACAAAACTGTTTGATACAAAGTGTGAAAATAAAACAGTTGTTGAAGAGAAAACAGCTGCAGAAAATGTTGGTGAGGTTGAAGATCATGCAGCATCAGGACTTGGGGAAATGAAAGGTCAAACAGAGAGGACGGAAAAACAAAATTTCAGGTTAGAAGGAGGTGTAATTTCCTCAGCCACTGGTTCAAAATGTCTAACCCAGCAAGAAAAAAAGAAAAACTCCACACAATTGGTTTATAATGAGCAAAAATGTAAAGAGTCCAGAATTTTATCTTCCGGAGATGCTTGGTGGAGCAATTCCTTTGAATCAGATCATGAACAAGTGGTTTCTCACATGCATAGTGTGACAGCAAAACAAAGTCAGGTTTCTTCAGAGAAAGAATCACAAAAATATAAGGGTGTTGGAACTTGTGCAAATCACTGCAATTCCTGTCATATCAATGGCTCATGCACATCTTTTACTGACGTTGTTCAGCAAACTGATGACAATGGAAAGTTAAATGAATCCTACAACAATTTCTGTGAAGGAAATTCCTCTTGGGTTAAATCTAACATCTTAGACAATCTAGGTGATGGATTATCAAAGGGGAAGACTCCACTAGCAAAATCCACAGTAGAAATTAATGAGGAAGACAATTTTTCAAGTCAGAAACACTCTAATGAATTAAATTTGAAAGAAAGTGTTGTACTCAGTGACTGTGGTAATGCAGTTTCCGGCGAAGCAATTGTTAAAGAAATGACAACGATCCCCATCAAACAGCAACATGTTCAAGAGGCGGTCAGTTTAACTGAAGTGAAGTCTAGCCCACCTCAATATTACAATGAGCCGAGTTTAGGGGATGCAGCCACTCCACATGGAAAGATGAAAGAACCTTTAGAGAGTTCACAGCTGTCCCAGTTGATGTCACCAGAGGAGAGCAAAGACTTTTCTCCTTTGTTAATGACAGCTTGTTTGCAGCATTATACACAGGGTATGAGCAGCAGAGTGAAGTCTATATCACTATCATCATATGAACCATCAACAGCAAGGGACCCAACACTACAGTCAAAAGATAAGAGAGACATTTTGGCAGTTTGTCTGTCTCACATGGTGGTTATATGGACATTTGTGTCTGAATCACAGTGGACTGTGCTCAGTAAATGGACTCTGCCTGTGGATGGAGAAGAAGAGTTTGTAAGTGTCAAGTTTGTACCAATTAAGTCTCATGTTGTTCTTCTGGTTGGTGGAAATTTTCATCATGGAAATGGAAGAGTCCTTGGTTATTCAGAGGAGGGTGAATACTCACTGGACCTGGAAATTGATGAACAAGAAAACAAGTATTCCTTTTCGACGATGAGTTTACTCCATGATACAAAGGATTACAAGACTGGCGAAGACGTAGAGTTTGTCATAGGAGATAAGACATCTAATAAAATTACCCTGACAAAGTGGACTTTGGACAGCTTTTGTTTGTTGGTCGAACAGTGGCAGAAGTTTACTCCTATCTATAGTGACTCTGAACTGTCATCTCTCCAATTTGTTCATGGAAGTCATTGTCTTCTTTTGGGGACTACAAATGAGAACTTGATATTGTGGAACCACATAACATGTCAACAATTAAGAAGCATAAACCTTCACACTTCAGGGTTGGGTCAACTGTCTTGTATCAACGCTTTTACTGACAAGGGTCTCCTTTTTCTGATAATGTCCAGTATTCAAGCAGCTAAGGGATGTAATTCTGATCATAAAAACAGTCATGGTTGCTCGTTGTACGCCATGAATCCTAGAAATTCCAGAGGTATCTGCTTGGAAAGTTTTGTCTTACCCGAAAGGGTCAGTATTGTGAGCACAAATGGTCAGTTTATTGCTGCTGGAGATCAGGAAAAGAATGTAGTAAAACTTTGGAACATAACCAGCAGTAATCAGTATGCCACCCTTCAAGTCTTCCAAGATGAAGTGAGCAGCATTGGCTTTCATCAAGACAAGCCTCTTATGGCCTTCGGAAGCATTACAGGCTGTGTTCATCTCTTTTCTTAA

Transcript

rna-XM_073388939.1

ATATTCAAGACGAGAACAAAGATGGCGGCGGCCTTGAAGTGGGATGGACGAATGGGTTTATGATTGCCGCGAGCACTCTTTTCTCTGTAGGTTGATATCACCATGAGTGAAAAAAATGTGCTCATCAGACAGCGGCTAATTGAACTAGAGAAGAAACATgcaaaagctttgaaaaaacttCAGAGAGCTGAAAAGTACAAGCAGAGGCGACAAACTTTTCATGGATTTACAGTTAGAGATGCAAACACTAGTAATTCAATCACTGTGGACAACTCTAACGTTCTTTTATCTAAGGACACAATCTCTACAGATGTTAGAAACGCACGGTGCTCATCAGCTCAAAAAAAGGGAGTTACTAAAACTGTGACATTCAAGGAAGCTCTTGACAGTGATAGTAAAGGTCAGCCTCGATCAGAGAATGAATGCAAAACTGTGGAGCAAAGTGACAGCAACAAAACATTTAACAGGAAATCTGAATTATTAGCTTCAAGTATTCCACAGCAAATATCTGAAGACAATGAAAAGGTGTTGCAGTGTTCGGTCAGCAGTGACAACAGCTTTGTTGCAGTAGATAGTAGTATGGTTACACCAACAGGCTCTCTTATTTCATCTGATAATGAAACAATTCTTGATAGTGATGTGGCTTCTACGGATGGGAAAGATTGTTTCCAGAGTCATCAAGGTGTAGACCTTAAGGCTATAGACAGTCGTCTCTGTGGCTCAGGACAGGGTGTTGTACAAGTACCTTCAGCAGGTAATGAAAGTTGTAACCATGAATTGTCGCAAAAGCAATGTCATTCTAATGGTCTGCTAGGGCAACATAATGCAAAAAATGTGTTAGctcaaagcaaagaaaatgtcAAGATGAGGAATTCATCAGATCATCATAATGCACAAGATGATAGCACAAGACATACATGTAGCTTGGAAAAAGCAAATGACAGAGTGACTGTAATTGAAAATGGTGGCAAACATCAAAACGAATCAACCAGCAACTCATTCACCCTGGATAAAAGTGATTATTGTCCTTCAGGGAGTCAGCCCTGGTTATGGctctttgaagaacagtttcCAAGGAGGTCTCCACGGATACAATCAATGCCAAACTTCAGAGATCAAGCTCATTTTTCTCAGGATAACAAAGTTACAcatgcaaagaaaacaaaacgcaTAAGAAAGAAGAAGTCAAGGACAGAGAATGATACTCCAATCAGTAGAAACAATAACTTAAAATCTACCACAGTACATGAAAATAATGGCAATTCACCACATAGCAGTTTTCCTGAAGAGAGTTCATGTATCagcaattttgtttttccaaggCCTActcaagaacaaacaaaaaatggtgGGTCTCTGGCTGTTGTAGTTGACTTTTCTCTACCTGATAGAGAGTTTGCAAAGCTGAAGCTTGCAAAAATCAAGGGAACTTTGTCAGCAGAAAGGTCAAGTAAAGACCTAAATACTGTAGTGGAAAAGATTACGGAAGAGCATGGTACTGAAGTGACGAGAGATACAAAACTGTTTGATACAAAGTGTGAAAATAAAACAGTTGTTGAAGAGAAAACAGCTGCAGAAAATGTTGGTGAGGTTGAAGATCATGCAGCATCAGGACTTGGGGAAATGAAAGGTCAAACAGAGAGGacggaaaaacaaaatttcaggtTAGAAGGAGGTGTAATTTCCTCAGCCACTGGTTCAAAATGTCTaacccagcaagaaaaaaagaaaaactccaCACAATTGGTTTataatgagcaaaaatgtaaagaGTCCAGAATTTTATCTTCCGGAGATGCTTGGTGGAGCAATTCCTTTGAATCAGATCATGAACAAGTGGTTTCTCACATGCATAGTGTGACAGCAAAACAAAGTCAGGTTTCTTCAGAGAAAGAATCACAAAAATATAAGGGTGTTGGAACTTGTGCAAATCACTGCAATTCCTGTCATATCAATGGCTCATGCACATCTTTTACTGACGTTGTTCAGCAAACTGATGACAATGGAAAGTTAAATGAATCCTACAACAATTTCTGTGAAGGAAATTCCTCTTGGGTTAAATCTAACATCTTAGACAATCTAGGTGATGGATTATCAAAGGGGAAGACTCCACTAGCAAAATCCACAGTAGAAATTAATGAGGAAGACAATTTTTCAAGTCAGAAACACTCTAATGaattaaatttgaaagaaaGTGTTGTACTCAGTGACTGTGGTAATGCAGTTTCCGGCGAAGCAATTGTTAAAGAAATGACAACGATCCCCATCAAACAGCAACATGTTCAAGAGGCGGTCAGTTTAACTGAAGTGAAGTCTAGCCCACCTCAATATTACAATGAGCCGAGTTTAGGGGATGCAGCCACTCCACATGGAAAGATGAAAGAACCTTTAGAGAGTTCACAGCTGTCCCAGTTGATGTCACCAGAGGAGAGCAAAGACTTTTCTCCTTTGTTAATGACAGCTTGTTTGCAGCATTATACACAGGGTATGAGCAGCAGAGTGAAGTCTATATCACTATCATCATATGAACCATCAACAGCAAGGGACCCAACACTACAGTCAAAAGATAAGAGAGACATTTTGGCAGTTTGTCTGTCTCACATGGTGGTTATATGGACATTTGTGTCTGAATCACAGTGGACTGTGCTCAGTAAATGGACTCTGCCTGTGGATGGAGAAGAAGAGTTTGTAAGTGTCAAGTTTGTACCAATTAAGTCTCATGTTGTTCTTCTGGTTGGTGGAAATTTTCATCATGGAAATGGAAGAGTCCTTGGTTATTCAGAGGAGGGTGAATACTCACTGGACCTGGAAATTGATGAACAAGAAAACAAGTATTCCTTTTCGACGATGAGTTTACTCCATGATACAAAGGATTACAAGACTGGCGAAGACGTAGAGTTTGTCATAGGAGATAAGACATCTAATAAAATTACCCTGACAAAGTGGACTTTGGACAGCTTTTGTTTGTTGGTCGAACAGTGGCAGAAGTTTACTCCTATCTATAGTGACTCTGAACTGTCATCTCTCCAATTTGTTCATGGAAGTCATTGTCTTCTTTTGGGGACTACAAATGAGAACTTGATATTGTGGAACCACATAACATGTCAACAATTAAGAAGCATAAACCTTCACACTTCAGGGTTGGGTCAACTGTCTTGTATCAACGCTTTTACTGACAAGggtctCCTTTTTCTGATAATGTCCAGTATTCAAGCAGCTAAGGGATGTAATTCTGATCATAAAAACAGTCATGGTTGCTCGTTGTACGCCATGAATCCTAGAAATTCCAGAGGTATCTGCTTGGAAAGTTTTGTCTTACCCGAAAGGGTCAGTATTGTGAGCACAAATGGTCAGTTTATTGCTGCTGGAGATCAGGAAAAGAATGTAGTAAAACTTTGGAACATAACCAGCAGTAATCAGTATGCCACCCTTCAAGTCTTCCAAGATGAAGTGAGCAGCATTGGCTTTCATCAAGACAAGCCTCTTATGGCCTTCGGAAGCATTACAGGCTGTGTTCATCTCTTTTCTTAAGACTGATGAAGATTGCTTTGTAAACAGGAGGGAGGATAGTTAACGAACAGTCAATGAGATATCaattaaatttgtaatttcagtGTTCGGGCTTTTTTTGATGGAGATTATGAAGCGTTTCTTAAAAGAAACTCCTTTTTCGAGGAAAGTATTCAGTGTTAAGCTTGTTTGATATAAGAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16756 all species →	PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR042417 all species →	Family	Partner and localizer of BRCA2	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR031920 all species →	Domain	Partner and localiser of BRCA2, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14662 all species →	PARTNER AND LOCALIZER OF BRCA2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073245040.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.