Gene detail

Detailed information of XP_073245210.1 in Porites lutea

Genomic Location: chr6:1416585...1422098
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140940194

ATGGCTGCCGTTAAGATTCGTTATGGGCGTTTATTCTGCATTTTTCGCCTTTGTTACAAACCTGAATGCTTTATCCCACAAGGAATAACTGTACGAGGCTTATGTAGTACCGTTATATCTAAGTTATTTTACAAAACGCCTCTACTTTCCGGCAAAAAACGGAATGGGATAAGAACGACGCATGATGGTTTTTTAAAACCAAGGTCGTTTGGTCAAGTCGATCTCAGAACAAGATCACGATCAAAGGACGTACACTCAAGTAGAGGTGAAGAAGACTCAGAATATGATTCGGAGAGTGAGGATGAAAACATTTTGGTCGGCGAAAGTAACAAACGTAAACAAAAATCCGATCAGGCCGCGAAGTTCAGGAAATCTAAGCTCAGACAAAAGTCTGCCAAAACGATGACTTTACGTCCCTCAAAATATCTGTTTAGAGATCGTAAAGATTGGAATGAAGAGAAGCAGTGGGAGGGAAGAGAAATTCCTGAAGACCTCAAAAGCAAAGCAAGTTGGTATTCCAGGCAAATGGCCAAGCTAGCTAATGAAGGCGAGATTGAAAAAGTCCTGGAACTCTTTTCATCTTTCAAAGAAGAAAAAATTCCCTTGACGGTGGAAATTTTTAACATCATCATTTCTGCATATGCCAGAGGTGGAAGGATCAGAAAAGCATTTAAATTCTACAATGATGTTAAAAAGAGGGGACTAAAACCAACTCCACGGACATACACCAGCCTGTTCAATGCTTGTTCAAAGTCTGCAGCTCCCAGTCAAAGTAGCTTAGAGCATGTTGAAAAACTCCTGGCTGAAATCAACACAAGAGTCAGTGAAAAGGATTTTGAAATAAATGCCATCACTTACAATGCTGCTATCCAAGCTGTAACTGTGTGTGGGGATCCTCTTAGAGCATTTGAAATCTATGATGAAATGAAATACAACAACATTGAGCCAGATGGACACACCTTTTCATCCTTACTAACAGCATGTTCACTTGACAATATCAATGGTCCCAGTACAGCACTAAACTTGATTGAAGAAATGAAGGCTCTCAAAGTAAAGCCAGATATCTACATTTTTAACTCTGTATTGAAAGTAATGAGGGATTTCAAAGTTTTTAATCAGTATCAGAGTGCAGAGGCTACTCCACCTCGACAGAGTGTTGGAAACACAGAAATGCCTAAAGTTCAGTGTAAAGGTGCTCAAGGAAATCCAAACTATATGAGAAATAAAGAAGTATCAGGAGATGAGGATACTAACCAAGGTGCTTCTTACAATCAACAAGGAAATAACATTTCTAATGTAAAACAAGTTGTTGATGATCTCAACTTACACAATCACTTCCTTGGAGTGGAACAGTTCATTCAGATGATGGCTGTTGAGGATGTTTATCCTGATGTTCGAAGTTTTCAACTGCTACTTTACTTGACAACATCCAAAGCAGAAGAGGAATACTTGTTGGAACTCATGAAGAGCTGTAATGTTTCTCCCGATGTTACATTTTTTAATACTTTGGTGAAGAGAAGCGTGTTGGAGGGCAATTTACAGAAAGCTAAGGAGCACATGAAGAGACTTGAGGAAACACTGAATGTTTCACCATCAGAAAAATCCTATCAGACGCTTGCACGTGGCTGCACAAACCAAAAAGAACGAATTGCTTTACTTGACGAAATCCAGTCTGAAGGAATCACCCCAGCCCAGTCAGTGTATGGGACGTTGATTGCAGGAGCAGCTAAACAGAGACAATTTACTTCCCTTATTCAACTTGTTAAGAGAATGACACACGATGGAGTGAAGCCAAATGAACGAATGATGGAAACTCTTGAACGAGCTTACATGCTGCCCTGTAGGAGACCTATCCTAAAGGGAGATACAAATCGCCGTCTTGCGAAGGAGAAAAGATTTCATCATGTTGAACAAAAAGGTTTCCAAACATTCTTTGAAAACTGGAAGGAGAAAATCATGAAAACAGAACCTACATCGAAAGAGAAGCGGCATCTTTTCGACTGGGAAAAACATGCTGAACTTGACGATGACGCCAGTGATGACGAAGACTCCAAATTTAGTCACCTTTAA

Transcript

rna-XM_073389109.1

CATttcaacatggctgccgttaAGATTCGTTATGGGCGTTTATTCTGCATTTTTCGCCTTTGTTACAAACCTGAATGCTTTATCCCACAAGGAATAACTGTACGAGGCTTATGTAGTACCGTTATATCtaagttattttacaaaacgCCTCTACTTTCCGGCAAAAAACGGAATGGGATAAGAACGACGCATGATGGTTTTTTAAAACCAAGGTCGTTTGGTCAAGTCGATCTCAGAACAAGATCACGATCAAAGGACGTACACTCAAGTAGAGGTGAAGAAGACTCAGAATATGATTCGGAGAGTGAGGATGAAAACATTTTGGTCGGCGAAAGTAACAAACGTAAACAAAAATCCGATCAGGCCGCGAAGTTCAGGAAATCTAAGCTCAGACAAAAGTCTGCCAAAACGATGACTTTACGtccctcaaaatatctgtttaGAGATCGTAAAGATTGGAATGAAGAGAAGCAGTGGGAGGGAAGAGAAATTCCTGAAGACCTCAAAAGCAAAGCAAGTTGGTATTCCAGGCAAATGGCCAAGCTAGCTAATGAAGGCGAGATTGAAAAAGTCCTGGAACTCTTTTCATctttcaaagaagaaaaaattcccTTGACGGTGGAAATTTTTAACATCATCATTTCTGCATATGCCAGAGGTGGAAGGATCAGAAAAGCATTTAAATTCTACAATGATGTTAAAAAGAGGGGACTAAAACCAACTCCACGGACATACACCAGCCTGTTCAATGCTTGTTCAAAGTCTGCAGCTCCCAGTCAAAGTAGCTTAGAGCATGTTGAAAAACTCCTGGCTGAAATCAACACAAGAGTCAGTGAAAaggattttgaaataaatgccATCACTTACAATGCTGCTATCCAAGCTGTAACTGTGTGTGGGGATCCTCTTAGAGCATTTGAAATCTAtgatgaaatgaaatacaacaaCATTGAGCCAGATGGACACACCTTTTCATCCTTACTAACAGCATGTTCACTTGACAATATCAATGGTCCCAGTACAGCACTAAACTTGATTGAAGAAATGAAGGCTCTCAAAGTAAAGCCAGATATCTACATTTTTAACTCTGTATTGAAAGTAATGAgggatttcaaagtttttaatcAGTATCAGAGTGCAGAGGCTACTCCACCTCGACAGAGTGTTGGAAACACAGAAATGCCTAAAGTTCAGTGTAAAGGTGCTCAAGGAAATCCAAACTATATGAGAAATAAAGAAGTATCAGGAGATGAGGATACTAACCAAGGTGCTTCTTACAATCAACAAGGAAATAACATTTCTAATGTAAAACAAGTTGTTGATGATCTCAACTTACACAATCACTTCCTTGGAGTGGAACAGTTCATTCAGATGATGGCTGTTGAGGATGTTTATCCTGATGTTCGAAGTTTTCAACTGCTACTTTACTTGACAACATCCAAAGCAGAAGAGGAATACTTGTTGGAACTCATGAAGAGCTGTAATGTTTCTCCCGATGTtacattttttaatactttgGTGAAGAGAAGCGTGTTGGAGGGCAATTTACAGAAAGCTAAGgagCACATGAAGAGACTTGAGGAAACACTGAATGTTTCACCATCAGAAAAATCCTATCAGACGCTTGCACGTGGCTGCACAAACCAAAAAGAACGAATTGCTTTACTTGACGAAATCCAGTCTGAAGGAATCACCCCAGCCCAGTCAGTGTATGGGACGTTGATTGCAGGAGCAGCTAAACAGAGACAATTTACTTCCCTTATTCAACTTGTTAAGAGAATGACACACGATGGAGTGAAGCCAAATGAACGAATGATGGAAACTCTTGAACGAGCTTACATGCTGCCCTGTAGGAGACCTATCCTAAAGGGAGATACAAATCGCCGTCTTGCGAAGGAGAAAAGATTTCATCATGTTGAACAAAAAGGTTTCCAAACATTCTTTGAAAACTGGAAGGAGAAAATCATGAAAACAGAACCTACATCGAAAGAGAAGCGGCATCTTTTCGACTGGGAAAAACATGCTGAACTTGACGATGACGCCAGTGATGACGAAGACTCCAAATTTAGTCACCTTTAACTAAGGAAGATGATTCGAAGTctgaaacattaaattttaacGTCATGGTTGACTATTTGGCTGGTAATAAAGACCGTGTGTTATTTATAAAATATGCAGTGCATTTTCTAtgttttgaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47938 all species →	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073245210.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.