Gene detail

Detailed information of XP_073245847.1 in Porites lutea

Genomic Location: chr6:6943932...6965937
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073389746.1

CAATTCCAGCAGATGTGACTCCAGAAAAGGTCCCCACACATATTGTGGATTATTCTGTGCTAAACATGATTTCTTTAACCAGCGTTGGAGCAGTCTGAAGATATGCTTGTGGAGGAGATCATCAAAGCCAATGTAGTGTGTGTTGTGTATGATGTAACATCAGAGGATTCTCTAGAAAGaATAACATCATATTGGTTACCACTCATAAGACAAGCTTGTGAAGAAGACAGCACAGCCAAACCTGTCATTATTGTTGGCAACAAAtcAGACCTCTTTGATGGAAGCACAATGGATACTGTTTTGCCCATAATGAATGACTACACTGAAGTGGAAACTTGTGTTGAGTGCTCTGCAAAGGAACTTAAAAATATATCTGAGATGTTTTACTATGCACAAAAAGCAGTACTGCATCCAACAGCTCCTCTTTTCTCTGCTGAAACAAAAGAGttAAAGCCATTATGCCAGGCTGCACTGTCAAGAATATTTAAGATATCAGATTCCGATAATGATGGTTTATTGAACGACAAAGAACTGAATGACTTCCAGAATCGATGCTTTAATACTCCTCTTGAAGGGCAAGGATTGCAGGATGTTAAGAATGTGGTCAGAAAGAATGTGGATGATGGCCTAAGCAATGGTGCTCTCACACTTAAAGGTTTCCTTTTCCTCCACACTCTATTTATCCATAAAGGGCGTCATGAGACAACATGGACAGTACTGAGGAAGTTTGGATATGGAGATGAACTAAAGCTCAGGCCAGAATATCTGTGTCCAGCGATTGATATTGGTACAGATCAGACAGTGGAATTATCAGATGCAGGATATCAGTTTCTTATTGACCTCTTTCACAGGCATGATAAGGATGAGGATGAAGCACTGAAGCCAGAAGAACTTCAGGAGTTGTTCAGTATTTTTCCCACAATGCCGTGGGGTGAAGATGTTGTCAACTCTGTTGAAACTAATGCCAATGGCTGGATCACTCTTCAGGGATTTTTAGCTCAATGGACGCTAACAACGTTTTTAGACTACACGAGGATGTTGGCATATCTGGCCTCTTTTGGTTACACTCATCAGGAAAATGAACCTTCTCTGCAAACTGCAATAACAGTTACACGCAGTAAAGCTGTTGATTTGCAGAAGAAACAGACGTCACGTTCAGTGTTTCAGTGTTATGTTTTTGGAGCGCCTGGAGTTGGAAAGACTGCCTTTCTTCAAGCTTTCTTAGGACGAACTCTTGAGCCTGGTGAATCAGACAAGAATTTGTCAAGTTATGCTATTAATCTGTTGGAAGTAAACAGACAAGAAAAATACTTAGTGCTACGTGAAATCGAATGGGAAAAATCCGGCCTCCTGTTGCATGACCGACGTTGTGATGTGGCGTGTTTTATGTATGACTCTACGGATGCTGCTTCATTTAACCAAGTTGTACAACTTAGAGAGAAACTACCCAAGACTGTTCCTTGCCTGTTAATAGCAGGAAAGAGCGAAGGAATAAGAGCTCAACAGGATTTTGAAATGCAGCCAGACTTGTACTGTACCTTAAACAAGCTTCCACCACTTCAGCCATTCTCGTCGCTTGGTAGACCTGTCGTTTACAAACCTATCTACAGCAACCTGGCACAAATGGCTGTCTATCCACACCTTTGTGGTCCCGATGCAGATAGTGCGACTTCATATTGGGTTATTGCCGGATTAGCAGCTGCACTTGTAGCAACGGCTGGTATTGTGGTGTTTAGATACTTACGAAAAGGGGGATCGACCACGTGACACTCGATCCCGATCTTATGGCGAGTGAGAAAAGAATGACTCTTGATAACAAGAACTGAAACGGGTTGCATTTCGCGGATGCAAAATGGGTGGAGTCTGGCAGAATTGAGAGAATACCATATATTAGCCGTTTGAGTTCTTTTAATTGGAGTACATGTAGTACAGGGAGTTATTACCGATGAACAATGTCTCAATTATTGTATCGTTCCAACgtcaatttattttttccccAGAATTGTACAGTTATTGCTTTTAATTTAAACGTAAAGCTCAAGATAAAGTATCATCATTGTATTAAAATTTTGCATTAGCATTGTTTTCGATTTCTCTTTTGGCGATTGTAAGTcctaaaagaaattgaaaacaatgtttatgcGAAATTTTGGAGGGACAGCAAAGAGTATTacggtatttaaaaaaaaaaaacgcagagAACACTGCTTCTTTAACTAAGCGAACTCgatttaattactttttaaacCAAACCAATCGTAAGCCAATCTTAACTGTTGAACCTTTAAATTTTCCCCTCCTTGTTTATAATAccatagcctgttcacagaccctccgTTTCCTCTTTAGAGATCGTCGAGCGGGTGCgcgtttgaaaagaaaaaccgcGGGCACTTATTGACCGTTAACGCAAGGGGATGTTTTGCCATTGCTCCGCGCTCGCTCTCACGCGCACGCTTCTCTCGCACGCTCGCTAAATTcatcgaaaaaaagaaaaaaattgtggaCAGGCTATCAATACTGCTATCACGGAAGAACCTCTCCTTAGGAACAGTTCTCCGAAATATTCTTAAAGATACCAAACATCACCCAATCTCTATCTGTTGAAGTTGGATAACTGGCTCTATCGCTTTTCTGTCGATGTTAACGAGGATGGACTCGCCCTAGTGTAATATTCATCGTTTGATAATTATTTTCTGCTGACGTTTTGAGCTTGTAGCCATAGGTAACACTGTAACATTCCCAGTTGCAATTAGTTAGGTAATATAGCAAAAAAGGGTCGcatgtatttgtatttatttgaCAGTGACAGCTTCCTTGCCCCTTCACAATACAGTGAAACTAAAGAAAGTGTATGAAGTGCCCTCGTACAATCAGTAAAAACATTCTTAAAAGGTGTG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003999 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08355 all species →	EF_assoc_1	EF hand associated	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF08356 all species →	EF_assoc_2	EF hand associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013566 all species →	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR052266 all species →	Family	Mitochondrial Rho GTPase/EF-hand domain-containing protein	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013567 all species →	Domain	EF hand associated, type-2	Interproscan
IPR020860 all species →	Domain	MIRO domain	Interproscan
IPR021181 all species →	Family	Mitochondrial Rho GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46819 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073245847.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →