Gene detail

Detailed information of XP_073247582.1 in Porites lutea

Genomic Location: chr7:32824846...32844902
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073391481.1

TCCCCGTTGGGCCAAGGTGAAAGGCACACAAGGCCTGCCCAGACATGACCAGCCCTCGAGTATTCCCTCCTCGCCAACTCGTGCCCGTCTTTTCATGGGTCTTTCATAGGGATGACAGAAGCTTTAGTTCATCATGATCAGGATGAGGATGGGAATAATGGGCAACCAAAGCTGAAACGACTCAAAGCATTATCTGATGATGTAGGTATGACATCCAGTGAAAATGATGAGCAAGACATAGTTTATGGTGAACTTGTAGTTCTGGGTTACAACGGTTCTCTTGATGATGGAGAACTCGAGCGCCGTCACCGAAGCTCGTATATTTTGTGCCAGAAAGGATCTCCCTCAGGAGTGCAACCCTACAAACTACACCTGGCTTCGTCCAATACGGGAATGCAGATTGTTAATTCGCAAGCCCATAGCGTGTCGTACACTTTATCTCGTGGAAATGCTGTCGTAGTTGAGTACAGAAGAGACCCTGCAACTGACATGTTTCAGATTGGTCGTTCAGCAGATTCTAAAATTGACTTTGTCGTAATGGACACTGTTCCTGGAAACAAGCGTTCAGAAGTCAACCAGGAAACACAAAAGAGTACAATCTCTAGATATTCCTGCCGCATCGTGGTTGACAGAGAAGCACCTCACACAGCCAGGGTGTATGCAGCTGGGTTTGACAAATCTAGTAATATCTTCTTAGGGGAAAAAGCTCCAAAATGGCAAAATGAAGAGAATATGATGGATGGCCTTACAACCAATGGAGTTCTTCTAATGAATCCCAAGGGAGGTGACACATGTCGACCAACAATATGGCGGGAAATATCTGTGTGTGGAAATGTGTATGGACTCCGCAAGACAAGGTCAACaactgaaaaaggaaaaaccGTTGAAGATGAGTCCAATGTTTTACTTGATGGATCGTTAATTGATCTTTGTGGCGCGGTTTTGTTGTGGCGGTCAACTGATGGTCGGAAGGAAATGGCAACCCTAGAAACCATAGATAAAATGAGAGAAAGACTTAATGCTTCTCGGCCCCAGTGCCCTGTTGGACTGACGACACTGAGATTTCCAGGCCAATTTTCTGAGCAGTCCTCTTCCGGCAGTGTACCTTATGTGTATTTGAAATGTGGTCACGTACACGGCCTGCATTCCTGGAATTCACCCGACACATTCAGTGGGAATTCAACTCAGGACAAGCGAACATGCCCTGTCTGTTTACAGACCAGCAGTTACGTTCCATTGAGCCTGGGAAGAGAACCAGCTTTCTATAAAGGAGAACCCGCAGCCACTCACGCCTTTGTTCCGTGTGGCCATGTTTGTTCTGAGGAAACTGTGCGgTTCTGGCAACAGGTGCCCATTCCCCACGGTTGCGACGCGTTCCAGGCCATTTGTCCTTTCTGTGCAGTTCCGCTTGAAGGAGAAGACGGTTTTGTCAAGCTCATATTCTCCTCAGATGAATAACCATGTAAACATTATATAAAGAAGTTGTACAATTTTATCGAAAATATATGGCTGTAGTATTTGATTTGTAAAAATTATCCCTCCAAGccatttaatttatttctcaaaGGTTGTAGTTTTCTTATCATTTCTGTCCAGCTGTTATTTCTTCAGTGAATTATCCTGCAACGTACGTGATTACTTATTTTCGTATAATTTATCGAACAGTATTTCTTCTTCACGATTCCATATTGTAGAACTATTTGCCTCTTTGTAGcattgagaaaaagaaagaattgcATGAATATTCTTGAGGGTTTTATcgcaaaaatgttttaaaaaagtaaccCAAAGTAATCTTCTTTCAGCATGGGAAACCTTGCTTGGTTATTAACCGTTTACCACTTCCCTACCATGTCCAAGATACTTCTCTTTCGACTGAGACGAGATCGCACTTATGTAAAACAAACTTAAAGTaaagggcttaaagggttagaAACCTTAAAGATCCAGAagtattttatagtaaattcaAAGGTAGtttgatacattttttaaattataccTGAACTTGGATTTCTTGGTGTTAGGTTGTTTCGCTACAGAGTGTTCTCCTTACAACATTAACAATGAAAACCGTGATTATTTCTTGTGCCATATTCGAATGAATTATTGTAGCCTCGTCTTCACATCTCAACGTTGAGGTGAGGAATAAATTACGCGTAGATCTTATAGTATATGAATCGTCAATTTAAAAAAGTATCGAGTGGCTTCAGTGTAGCGAAACGACTGGTAACCGATCATCCTCGTTCCCAGGTCAATTCGTGCTATCCGAATAAGcggaggaggcttggaaccaaGCGGGAGTTTTCCCAACAAGCTTGAcgggtgacgtcacatccgaactTACCGAGGGCGACTGGGACGAGGCTGGTAACTGATAACTTGAGGGTAGATACGACGGTGGATACGCTTTTTTAGGCATTGATTAACGCTTTAGCTCGACTTTCATTGCTTTTGTATGTCGTCAAGAGCTTTAGATTCtcagacgagtacgactacgagtacgagattttctcaatactaagtagtgcacgcgcgtgaaccagcgtcattttggcgggaaaatgtggtagccgtcgtcattctaccacGAGTTTTAACGcgaatgtcgtggtggcgaaaacaagttatcaaatgttagaagttttatcattttgcgatggGGAAAGCGCGAAACCTCCTTCagtaaaggtaacagtgctaacttttcttgtgaaatatgataaaacatagctttccgggaagtctatattttgagaataggcgaaaaaaattcaagtcaaatctcgtactggtagccgttctcgtcctcgaatctaaaggtctctattatggctcttgatgtCGTGTGATACTATGCACGACTGTTATTTTCCAGTGTTATTTCTGCATGCGTATATCTTTTAAAATCGCCTTAGTTTATGATATTTATTTAATCTAGAAAATAATATTCATGACTTCGAAGGGCTTTTTCATATCGATGAGCGAAACTTCTGATTTGCTAAAAAGCATGTTAATGAGAAATTTAGCTTTTGGGTGAGGGAACTCAGTTTGAACATATTGATATCTAAAGGGCTAAGAAACGTACTCAATGGGAAAGTCTGCGAGGTATGTTAAAAATATAGACCAGCATTTATTGCTTTGATTATTCATTCTCTGATTACAAGCCAATTGGCCTGATTCTCACAGGATCTAAGTCGCTCGCGGCTCTTCACTCCCTTACGTCTTAGAATCAGGCTACAAGCCAGTCACACTATGCGTTTTCTTCCGTATGCCGTCTAAACTAGCGCCTTACTTTTACTTTGTAACAAAGGTGAAATTATGTCGTTTGTTAATGTGTTTCTATAGAAACCATCGTACTGCTATTTGCAGGTGTTATTGTGACTTTTTTAGCTTTGTCTTTCCTAATTTTTAGCAGCAATAGAACAATTTTGACTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04710 all species →	Pellino_FHA	Pellino, FHA domain	Domain	Interproscan
PF20723 all species →	Pellino_RING	Pellino, RING domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048334 all species →	Domain	Pellino, FHA domain	Interproscan
IPR006800 all species →	Family	Pellino family	Interproscan
IPR048335 all species →	Domain	Pellino, RING domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12098 all species →	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0008592 all species →	Biological Process	regulation of Toll signaling pathway	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11964	PELI; pellino	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.