Genomic Location: chr8:32222968...32230839
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140946186 |
| Transcript |
| rna-XM_073395270.1 |
| Protein |
| XP_073251371.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006840 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00466 all species → | Ribosomal_L10 | Ribosomal protein L10 | Family | Interproscan |
| PF17777 all species → | RL10P_insert | Insertion domain in 60S ribosomal protein L10P | Domain | Interproscan |
| PF00428 all species → | Ribosomal_60s | 60s Acidic ribosomal protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001790 all species → | Family | Large ribosomal subunit protein uL10 | Interproscan |
| IPR043141 all species → | Homologous_superfamily | Large ribosomal subunit protein uL10-like domain superfamily | Interproscan |
| IPR030670 all species → | Family | Large ribosomal subunit protein uL10, eukaryotes | Interproscan |
| IPR040637 all species → | Domain | Large ribosomal subunit protein uL10-like, insertion domain | Interproscan |
| IPR050323 all species → | Family | Universal ribosomal protein uL10 | Interproscan |
| IPR043164 all species → | Homologous_superfamily | Large ribosomal subunit protein uL10-like, insertion domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45699 all species → | 60S ACIDIC RIBOSOMAL PROTEIN P0 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0002181 all species → | Biological Process | cytoplasmic translation | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0070180 all species → | Molecular Function | large ribosomal subunit rRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02941 | RP-LP0, RPLP0; large subunit ribosomal protein LP0 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |