Gene detail

Detailed information of XP_073253376.1 in Porites lutea

Genomic Location: chr9:26120264...26122468
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140948055

ATGGTCAGGGACGCCGCTCTAAGAACTAAGGGCTCGGGCGGGCCCTCTGGTGTAGATGCAAACGGCTTCAGAAGAATTCTTACTTGTAAATCCTTTAAGAGATCAGGAACAGAACTATGTGAAGCTATAGCCAGCATGACCAAACGCCTATGCACGGAGTATGTCGATCCTCGGGGTCTGGAAGCAATTTTAGCGAATCGGCTTATTCCCCTCGACAAAGGAGAAGGAGCGGTGCGACCGATTGGAGTAGGCGAAGTGTTAAGGAGGATTATGGGAAAGTGTGTCACGAAGGTCACCAAACCGGAAGTTATAGATGCGAGTGGCTCTTTACAAGTGTGCGCTGGTCATAAGAGTGGGAGCGAGGCGGCCATTCACGCAATGCGGGAACTTTTTGAACATGACAACAGCGACGCCGTTCTGCTTATAGATGCGTCGAACGCCTTCAACTCCTTGAACAGAGCCGCCGCCCTGCATAATATTAGAGTGCTATGCCCATCAATAGCGACCTACGCAATAAATACTTACAGGGAGCCCGCACGCCTCTTCATTGTTGGCGGACAGGAACTGAGATCATCCGAAGGCACTACACAGGGCGACCCACTTGCCATGAGCCTATACGCCATCAGCCTTCAGCCACTAATAACGCGACTACAAGTCAAGAGCGCAGCTAGCCAATGTTGGTATGCGGATGACGCAACTGGGTGCGGCTCCCTAGGGGATGTGAAGACATGGTGGGACGAGCTCATGGTCAGCGGGCCTCCACTGGGATATTTTCCAAACCCCCAAAAATGTTGGCTCATTGTGAAACCTGAAAAAGAGCGACCTGCTAAGGAGATCTTTAGCGAGACAACCATTAACATCACAACTGAGGGTCGCAAACATCTAGGAGCGGCTCTTGGTTCCAGAGATTTTTTTGAAGAGTATGTTGACGACAAAGTTGAGGAATGGGTTGCACAAGTAACCAGTCTTGCGGAATTCGCTACAACACAGCCTCAATCTAGTTATGAAGCCTTTGTGTTTGGACTAAGGCACCGTTGGACATATTTTTTAAGAACTCTGCCAGACATAGGCCCTTTTCTTGAACCGCTAGAGCGTGCCATAGCGGATTTGCTTGTGCCGGCTATCACCGAACATGTTACCACACAGGAAGAACGGGATCTTTTAGAACTCCCAGTTCGCTTAGGCGGGCTTGGGCTAGTCAATCCAGCCAGAACCGCATCACAAGAGTATGAGGCGTCCGTTAAGATCACATGCCCTCTTGTGCGGCAAATTGTCAAGCAAGCCCACGAGCCACCGGATGAGACGGAAATTAAGACCTTGCAAGCGAGTGCACGGAGAGAAAAAGATGAATTGTTGAAGATGCAGTGTGAGCAAGTGAGGGAATCCTTGCCTAGCAAAACTGAACGCGCGGTAGAGATAGCTACGGAGAAAGGAGCCTCGAATTGGTTGACGGTGATCCCGATAAAGGAGATGAATTTTAACTTGAGCAAAAGAGAATTCAGAGATGCAGTCAAACTAAGGTATGACTGGGAGATCGCTGACCTACCGGCCATGTGCACATGTGGGGACTTATTTACCGTTGACCATGCTATGGTCTGCCGGCATGGGGGGCTGATCATTCAGAGGCACGATGAGATTAGGGACTTAGAAGCGGAAATGTTGTGCATGGTTTGCACCGACGTAGAGACAGAGCCAGTCCTTCAGGAGATCACTGGGGAAGAGCTAAATAGAGGTGCAAACAAAGCGCCTGATGCTCGACTAGATGTTCACGCTCGCGGGTTTTGGGACAGACAGCAATCTGCTTTCTTCGATGTTCGGGTGTGCCATCCAAACGCAGATTCGTATCGAGAACTGTCTCCGAAACAGATATTCCAGCTACATGAAAATGAGAAGAAGAGGCAATATAGCAGGCGGGTTTTGGAACTGGAGCAAGGGACATTCACACCATTAGTCTTTACAAGCACAGGTGGAATGGCCGATGAATGCAAGAGATTCCATAGCCGCCTCGCAGAGCTACTTGCGTTAAAGAAAGGAGATGACTACGCTACAACCATATCTTGGATAAGGGCGAAAGTATCCTTTGCCATCCTACGATCAGCCTTGCTGTGTCTCAGAGGAATCAGGAGAAAGAGAAGAGCAGTCAATATATCTGACATTGACATTACATCGGAAAGTGCGCAAGCCAGAATTTAA

Transcript

rna-XM_073397275.1

ATCAATGGAGACATGGTCAGGGACGCCGCTCTAAGAACTAAGGGCTCGGGCGGGCCCTCTGGTGTAGATGCAAACGGCTTCAGAAGAATTCTTACTTGTAAATCCTTTAAGAGATCAGGAACAGAACTATGTGAAGCTATAGCCAGCATGACCAAACGCCTATGCACGGAGTATGTCGATCCTCGGGGTCTGGAAGCAATTTTAGCGAATCGGCTTATTCCCCTCGACAAAGGAGAAGGAGCGGTGCGACCGATTGGAGTAGGCGAAGTGTTAAGGAGGATTATGGGAAAGTGTGTCACGAAGGTCACCAAACCGGAAGTTATAGATGCGAGTGGCTCTTTACAAGTGTGCGCTGGTCATAAGAGTGGGAGCGAGGCGGCCATTCACGCAATGCGGGAACTTTTTGAACATGACAACAGCGACGCCGTTCTGCTTATAGATGCGTCGAACGCCTTCAACTCCTTGAACAGAGCCGCCGCCCTGCATAATATTAGAGTGCTATGCCCATCAATAGCGACCTACGCAATAAATACTTACAGGGAGCCCGCACGCCTCTTCATTGTTGGCGGACAGGAACTGAGATCATCCGAAGGCACTACACAGGGCGACCCACTTGCCATGAGCCTATACGCCATCAGCCTTCAGCCACTAATAACGCGACTACAAGTCAAGAGCGCAGCTAGCCAATGTTGGTATGCGGATGACGCAACTGGGTGCGGCTCCCTAGGGGATGTGAAGACATGGTGGGACGAGCTCATGGTCAGCGGGCCTCCActgggatattttccaaacccccaaaaatgttggctcattgtgaaacctgaaaaagagcGACCTGCTAAGGAGATCTTTAGCGAGACAACCATTAACATCACAACTGAGGGTCGCAAACATCTAGGAGCGGCTCTTGGTTCCAGAGATTTTTTTGAAGAGTATGTTGACGACAAAGTTGAGGAATGGGTTGCACAAGTAACCAGTCTTGCGGAATTCGCTACAACACAGCCTCAATCTAGTTATGAAGCCTTTGTGTTTGGACTAAGGCACCGTTGGACatattttttaagaactctGCCAGACATAGGCCCTTTTCTTGAACCGCTAGAGCGTGCCATAGCGGATTTGCTTGTGCCGGCTATCACCGAACATGTTACCACACAGGAAGAACGGGATCTTTTAGAACTCCCAGTTCGCTTAGGCGGGCTTGGGCTAGTCAATCCAGCCAGAACCGCATCACAAGAGTATGAGGCGTCCGTTAAGATCACATGCCCTCTTGTGCGGCAAATTGTCAAGCAAGCCCACGAGCCACCGGATGAGACGGAAATTAAGACCTTGCAAGCGAGTGCACGGAGAGAAAAAGATGAATTGTTGAAGATGCAGTGTGAGCAAGTGAGGGAATCCTTGCCTAGCAAAACTGAACGCGCGGTAGAGATAGCTACGGAGAAAGGAGCCTCGAATTGGTTGACGGTGATCCCGataaaggagatgaattttaacttgagCAAAAGAGAATTCAGAGATGCAGTCAAACTAAGGTATGACTGGGAGATCGCTGACCTACCGGCCATGTGCACATGTGGGGACTTATTTACCGTTGACCATGCTATGGTCTGCCGGCATGGGGGGCTGATCATTCAGAGGCACGATGAGATTAGGGACTTAGAAGCGGAAATGTTGTGCATGGTTTGCACCGACGTAGAGACAGAGCCAGTCCTTCAGGAGATCACTGGGGAAGAGCTAAATAGAGGTGCAAACAAAGCGCCTGATGCTCGACTAGATGTTCACGCTCGCGGGTTTTGGGACAGACAGCAATCTGCTTTcttcgatgttcgggtgtgccatccaaacgcagattcgtatcgagaactgtctccgaaacagatattccagctacatgaaaatgagaagaagaggcaatatagcaggcgggttttggaactggagcaagggacattcacaccattagtctttacaagcacaggtggaatggccgatgaatgcaagagattccatagccgcctcgcagagctacttgcgttaaagaaaggagatgactacgctacaaccatatcttggataagggcgaaagtatcctttgccatcctacgatcagccttgctgtgtctcagaggaatcaggagaaagagaagagcagtcaatatatctgacattgacattacatcggaaagtgcgcaagccagaatttaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000054 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR040260 all species →	Family	Replication factor A protein-like	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13989 all species →	REPLICATION PROTEIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073253376.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.