Gene detail

Detailed information of XP_073254122.1 in Porites lutea

Genomic Location: chr9:21435740...21449052
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073398021.1

GGGGCTGCAAAACTCGACATCCGCTTGCACGAAACACTACTGAAGTTCAAAGACCCCTACAGTTTGAGCTCGTTCTTTTCAATTCAGACTGTTGAAAATAGGAAACCAATAATTCTCGTGTTGAGGAGATCGTAAATTTTTGACCCGAGATTGCCTCTAGATAAACTTGTCGTGGTTTAAGCCGGGTCCATTTTGAGAAATAGCTTGAGGCAAAAAACATTAGTATAGAGTATATTACGAGTTAGTTAATCAAGCAGACTCATATACATAACAAAAGAGCAGCACTCTAGGACACCCTATTTATTGGTGAAACCTTCTCAAACTTCTTAGGTCTTTGTGAAGAATATTCGACGGACGCAAACGAGTAGACCACACTCACTTCAAAAGGTTTTCGCTTACGGCCCACTGACAGTGTTTAGTAACGCTTGGCTGGGTTCGAACGTCCGTAGCGCCTGAGTGATTTTTGGAAAGGCAAAATACATATACGGATCAACGGTCCCCTGGAATGGCACATACTACGAAACAAGGACACGGTGGAGTGAATCAACTTGGAGGCTTGTTCGTGAATGGAAGACCCCTTCCCGATGTTGTTCGTTCAAGAATTGTTGAGCTGGCTCAGAGTGGAGTTCGGCCATGTGACATTTCAAGGCAGTTGAGGGTTTCCCATGGCTGTGTCAGCAAGATTCTATGCCGGTTCTACGAGACTGGCTCCATTAAACCAGGGGTAATCGGAGGAAGCAAGCCGAAGGTCGCAACAGGTCCTGTTGTTAACAAAATCGCGGAATATAAGCGTGCCAACCCCACCATGTTTGCTTGGGAGATTCGAGACCGGCTTCTTAGCGAAAATGTTTGCTGCCCTGACAATGTTCCCAGTGTGAGCTCCATCAATAGAATTGTCCGAAATCGTATCAACAGCGCAGATAGCAAAATAAGCCCTGGAAAGGCAGAAGATGTCATGAACGTCGGCCCCGAAGGCTTGAAAGTAGAGCAGTCGAACATCCACATGCCACGCAATTCTTACTCAATTAGTGGCATATTAGGAATGGGACCTCAACATCCCGGAAATTCGGTTCCCCCGAGCAAGAGAAAGCACTCAGTGGAAAGCGCAGAGAGTACAgGGAGTCATTCAGAAGAAGAGGTACAAGCTGAAGGGGACGTGGGATCCCCAACAGATTTGCGTGGTCACAAAATAGTTCGTCGACAACGCACTACATTCTCCGGAGAGCAAATTGAACAATTAGAAAAGACATTTGAGAAGACACACTATCCTGAtgtcttcacacgtgaaaaactTGCACAGGACGTTGATCTTTCTGAGGCAAGAATTCAGGTTTGGTTCTCTAATCGACGGGCCAAGTTTAGGAAACAAGAAAAGGTTCCTCCTATAAGCAGCCCCACAGCAGCCAGCCCTGCTCAATCAATACCCACCACCTTCATTAACACAGCTGGGTACCCTACTACTGTTATTAGCCCTCCACCAAATCATCCTACCCCTGTTCACGATGACGGCATTCCATCAAATCAGTACCCTCAGACTCATGAAAATACACCTGTTAAAGCAGAATTAACCGAACTGAAGCCAGTGACAGACCCTAGTTTGACTATGCATACAACAATGCATACAACAATGGGAATCCCTAACCTTGCTCCAGCCCCTCAAGTTCAACAGCCATCTTATGAAATGATGCGGCCCTCTGCTGCCACTCCCAGTCAGACATTTATTGCTGTTCCAAGTGCAAATCTGGTCCAAGCCTCCCATCCTATGGCCAGTGGGCAGGGATACACCATGCGCCTTAGTGACCACACTCAGTCAAGTGTTTCCAACAATAGCTCATCAGCAGTGTTCTCTTCTGTTGGGCAGTCTATCATGACAATGTCACCTTCTCAAGCTGTTCgtAGCCCTGTACAATATCAAAGGGTCATAACAAGTGGTGGAGATGTCCAAGCCACTTCCCCTCCTGCGGCCAATCCAGCACCAGGATATGTACTGCCACCTGTGAGCACACTCACAAAGGGTCAGCTCCCTGCCGACATGACTGGGCAATTCCCTCCGGCTAGTTATGCCCAAGTCCAGCCTCCATACCCTGATCAGTGGATTCCGTATGCGCCTCAAGGGTTCATTGGCAGACCAACAGTCTTTCTACCAGCAAACTGGTAATGCTGTGTGATAACTGACTGCTCCAGCTCCACCACCCACGGCACGAATGCCCACTGCAAAACTAAGCACCTCTGCATAGAACGGTTTCACTATGGACTCCTAaagtcatcatcattatcatcatctcACTGAAGTCACTGAGTGGTCAATAGCCCATAATACAGTTGCAGGTGGAAACAGGGCTGGAGTTGACcatgttttgatacaaccctatacaacccttcctgctttattatgtaaatcatgttgttgttatgctatctagtattttttaagcataatttccGTAATAAGAAAAGGAGGAAGATTTGTATCAAATCAAGGTCAACCTTAGCCTCACTTTCATTCAAAAGTTAGGATACAAAGCCGGCAACTGTGAAATGGTTTATTACGTCAAAGACAGATTTTCAATGTGTTTCTTGGAAATGGCTATGGTATTTTTAATTCATGCAATATTTTGTGTGCTAGGGGTGTAAATTAGactttttttctaaagaaaataaCATGTGAATTTTTTAACGGTTAAAACGATCAATACGTTAGTACACGTGTACTCGTTAGCTATATTTAGAATATATTTCATGGTCAGTCTACCACAGTATAATCATTATTTTAGGATATCTTGGAATTCAATGATAGTTTTGACTCTATTTTTATACCCAATCAAGTAGTGAGAATAGTATACATATTTTCGAAATTTACACTACTTAAGAATTATACAGTGTGCATTACCTCGTAAAAATGTATAGTTTGGTTCAAAACCATAGGGGCTTTTTAGCCAGCCCTTTGCTGAAATGTATTTTTGGTACTCATTTAACGTCACAGATGTACTTTTATTTACATGCTGTCGCTAACAAGAGTTAACATATTAAACTGTGTGGCTTTGCTCCTTTCCCATGATGGTCATTAGGGAGCTTGGGCATCGACGGGGGTGACGACAGCCACAACGTtaattcaaaaataaatttgcgttttttcaaacttagtTGTGTTTACTCCAACTCGCCAAAAAAGTCAAACATTTCCCTAGAGGTGAACTGTTGGGGACCGCACTCAATTTGTGAAAGAgactgaaagaaaaattcgtcgtcgtgtGTTCACGTCCTGCATAACAGGTCGCACGAGGAAATTTCACGTCCTGTTCGAACAAGGTCAACCTTCGAAGTGTGCTACatgtgcaaaattgttgttttgcttatcaaacctgttgcttttttgacgttgtcgttgtcgtcgtcgttgctaaagctccctattgggATTTGGAAGAGGAGGGGCGTTTAGggccaaaattaaaaaaagtttgaacCTAAAGTGGAATTTCCAGAGGGTTAGGGGGGATTGAACGATTAAAACCATTGTGGGGGCGTACGGATATTAATTTTCTGGAACAAAAAAATGTAGCAAATTGACCTTGCTTAATAACAATTCATGGTATTGCACACATTCTCTCAATATTGTGCTTTGCTTGCTCCTTAAATGTGGTATGCAGCGAGTGAAATCATATCGGCGAGCTATACTGAACATTGCGCATTGTACATGTATGCTTTCATATCGAACAGTTCCTTTCATAATATTACTCCCATACGTTTTGCTGGGTGACCTTCTTAGTGATCTACATTTAGTTAGTCATTAATCAATTCCCAAATTAGCCCGGTACTGTGATCACCGTTTTTGTCTGCAATGTTGGAGGATGAAACCTAGTTAGAAGAACTGTGTGTCAATGAAatttttgaattcaattttctttgcacTTCAAAAAGGAAGCTTTTTTATAACCTGGTCTAGGCTCCAGTTCTTAGAGGGTCGATTAGCGTTAACAGGGGTTATTTCTAACCTACTGTTAGACTGTTTTGCATTGTCACTGTGGGTTAACCTGAGAGAGGCCGATGAGAAAAACATTTGTATAAGCCTCAGCCACATATATCTAGAAGTGTGTACTTAGTTGACACCCCTGGGCTAGAACTTTAAAGTCTGTAATTGTAGTAAAATATACTACGTAATAAGATATTTAATGGCACCCTAATGGGGAAAGAGTAGAAGGTTCAGCTAAGCGAGATGAATCGAATATTGTAACATAGGGTGAAGTCTGTGTAACGCAATGTACGTATGCTGCGTTGTATATATTTTAAGTCTCAGATGTGATGACACTAGTTTCACTTACACGAATGCTTTTCCTGACGTACGTAGATAACTGTTGGTAGAATAAAGGCTTGTTAGGGCGTTAACTTATAGGAACAAATAGAGCAAAAACAAGTCGAGAAATACTTTTCTGCAATAACTGTAGCGATAACTTGTATTGACCGAGGAGGTTTCGAGACGTGATCTAGTGTCGCTTTTTCTACGACGTTCTCATTTTTTGAGCAGTTTTAGTGCTATTTGCTCGGTGTAGAAAATTGGCTTAGGGACAgagtgaatttcttttttttttcttgaattttagcGGAGATTCTGTAGATAATTAGAGGTAGCCTACCTAGAAACGGTGCTTGTTCCgaaattgtgattttttttttgtcatgctCAAAGAGCGTGGCTGATTCTTACTGTGACTTTTGTAGGGAAGGACAAATtaggatatttttttaaaaatatactttcaGAAATAAGAGGTGCAAAAAATTGGttatgtatttttctaaaaccTTGGCCTTTTTGTATTGTTTCGGAATAGCTACAAAAATCAGGGTTCGTACTTCATCCTGAAATACTACTCCACTTACAAGAATGAGCCTCTTAGGAGTGTGAAGTACTTACGTGCAAAAATCTATATTTTGATGCACATTCCTGATAAAAAACTCTCGCATTGAATGATTACAGCATGAATGCATCGAAGAATTAGAGgccgttttatttttcttccctttcGAAAGTAATGTATatacttttatatttttgtatcATCCAATGGAAATTTCTGGAGTTTTATTCCTTCTCAGTAGTACGAACGCTGAAAAGGTGTGAAAGCTAATTTGTCTACTTATAAGATGAACTGTATTTTCTAACTGCACTGACAAAGACCTTATTTTTGCTTGATCAACTGATGCAATACGTGTACGGACTATTTAAGCACCATTGTATGTATTTAAAGGGTACATTTAGTCTGTTTGTCAATAAAGTGTAACATTtgtaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043182 all species →	Domain	Paired DNA-binding domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR043565 all species →	Family	PAX family	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636 all species →	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073254122.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.