Detailed information of XP_073254130.1 in Porites lutea

Genomic Location: chr9:1640077...1658759
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000375 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF08205
all species →
C2-set_2CD80-like C2-set immunoglobulin domain DomainInterproscan
PF07714
all species →
PK_Tyr_Ser-ThrProtein tyrosine and serine/threonine kinaseDomainInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan
PF01607
all species →
CBM_14Chitin binding Peritrophin-A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR008266
all species →
Active_siteTyrosine-protein kinase, active siteInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR020635
all species →
DomainTyrosine-protein kinase, catalytic domainInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR001824
all species →
Conserved_siteTyrosine-protein kinase, receptor class III, conserved siteInterproscan
IPR013162
all species →
DomainCD80-like, immunoglobulin C2-setInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR001245
all species →
DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan
IPR002557
all species →
DomainChitin binding domainInterproscan
IPR050122
all species →
FamilyReceptor Tyrosine KinaseInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR036508
all species →
Homologous_superfamilyChitin binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24416
all species →
TYROSINE-PROTEIN KINASE RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0004713
all species →
Molecular Functionprotein tyrosine kinase activityInterproscan
GO:0004714
all species →
Molecular Functiontransmembrane receptor protein tyrosine kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0007169
all species →
Biological Processcell surface receptor protein tyrosine kinase signaling pathwayInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0008061
all species →
Molecular Functionchitin bindingInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0007275
all species →
Biological Processmulticellular organism developmentInterproscan
GO:0033674
all species →
Biological Processpositive regulation of kinase activityInterproscan
GO:0043235
all species →
Cellular Componentreceptor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_073254130.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP