Gene detail

Detailed information of XP_073254449.1 in Porites lutea

Genomic Location: chr9:26216700...26221378
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140949112

ATGGATGTGAGAAGCTCGAAGACTGGCTACGGATATTCAGCCCTTCATACTGCTGTCATATCTCGGGACATCAAAGCTGTACAAGCACTAACAAGCACTGAAGCATGTGATCTAGAGTCCAGAGATTCCATGGGCTTTACAGCTTTGCACCTTGCTACACTACAAGGAAGTGAACAATTGGTGCAACTGTTAGTACAAGCGGGATCTGACGTCAATAGTCGGACAAAAGAGGGAATGACTTCACTTCACATCAGTAGTGAACATTCTGAGGCAGAACAAAACATTATATCTACTCTAGTAACTGCCGGATCCTGCGACGTGAACGTGCGCAACAAACTCGGTCGCACTGCGCTTCACTTAGCAGCTAAACTAGGAAACATACATAATCTGAAAGTACTTATTGACGCTGGTTGCGACAGAGGTATTAAAGACAAACTTGGATTCACTGCGGTTGGTTTGGCTTTTAAGTTTAATCAGAAAGGGAGTGCGGATATTTTACTCCACTATAAACCCCGGAGAAGTCGTAGCTCCTCCAAAGACAGTCTTCTGGATGAAAATCGAAATGAACGAGCAGTTGAATGCAAAGATATTGAAAAAGAAGAAGAGACAGTTAGGAAGGATTGTGTTTGCACTACAAGTTTTCGAGTACGGGATGTTAAAACTGTTCATTCATTGAAGCAGTCTAAAAAGAATCAAATTCAGTTTCAAGAACATTGTAACAAGGTGTTATTGAAGTTAAAGAACAGGGACGTAAAAGAAGGCGAAGAGTTGTCTTGGAAAATTAACCATCTTCTCGGAACTATGGTTACAAGGAAAAGAGACAAATTGGATGGCTTAACCTCTTACAACTCGTGGAAAACACTTCACATATTAGAGAGAAAACTCTGGAACACAATTCCAAGTTGTGTTTCTTTCATTCATTATCCTTTTCTTGTATACTCTGTTGCATCGTTCGATGCTCGACCAAGCAAACGATGCTCCCTTGCTTTAATAAGGGAGGACTTATTTGGGAGAAATGCTGATCGCCGCAATTTGGAAACGGGCTTATTAGCAAAGCTGCTGACTGATTTGAAAGGTACCTTACTCTGTTCTCGCAATCCACGGGCGTCTTTTTGTTTTGAACAAAGGAATTTGCCAGCAGGTTTGACCAGTTTTGACCTCGAAGAGACAAGGCCGGAGGAGGTACCAGTATTTGACAACTTTGAACACTTCGCTCAAATATTAAAAGAGCTCTGCAAATGCAAGAGCGAGAAAATGTCGTCACTGAAGAGTGCAGATAGTGAAGCTAAAAGTGCGGGCGGAATCCATACTAAAAGCAACAAAATTTTGATCGTCGGAGATTCCGATGGGCAAGAGCACCAATTGCGCAAAATAATGAGCGAATTCGGTGTGGATGAAGTACAAGACTTTTTATCCTGCCTAAGTCAGGCGATCAACACTAGAAATCCCCAACCGCCATTCGTGGAAGATTTCGTGGAATTTTTTCTCGAAAACTCAAAGATTTTTACATATTGTCTCAACTCAAAATATTCGTTGTTTAGGACAATATTGGACAAATATCTTTCAACTAGCAGCCTATGGATAGCGGACAGAATTGCAAGTCTTTTCCTTCAAGTCTGCGTTGCTTTGTCGAGTGAGAAGCGACTATTACTTAGGTGCGCCGGGAATATTATGCAGCAAGGCCTGTCGCACGAACATTGCGATGCCTTTTCCCTCGGGAATTGCATTTTAGTTCGAATGGGACTTCTTAAGGGAGAGTTTGACGTCAACATCGTATCAAACCTCAAAGGTCCCCTTTTAGCGCTTGAACATATTTTCGGCGAGGATTATTTTCCAAGAAATCTTGCTTCTACATTTGCTTCATTTCTTTCCAAATCGAGTCCCAGACTGTTTGGATTAGAGGAGTTGCGCCTTCGGGCTCTTGTGTCTGCGGTTACCCGAGAAGTTCTTCCTACTTCGGTGCAGGAAGGTGAAAGAGAGACAGGAAGGAGCTTCAAGCGAATCTGTGACGTCGCTGCTCTTGAACAAGACAGGGAATTACTTTCGAAGTGCATAGACTCATTATTTTTTCGCACTTTTGTCGAGTTGAAATGCAGGGCGTGGCCTGTTGGGGAGAGCCTTCTCACGTACCTCGGCCTGCTGAAAAGCGAATACTCCATTGAGATTGTTAGAAACCTGAAATGCGCTTTAAAACTTCTTTTTCCTGTGGTGAAGCAAAGTTATTTTCCACAAAAACTTAAGGAAATGTTTTTAGTTTTCCTTAAAAAACCGAATCCTGCTCTGAATTCGTGTTCGTGGGTGGTTGAAGAGATCATTAATAAGCAAGGTGATTGGTAA

Transcript

rna-XM_073398348.1

GTTTCATGCTATTTACGGTAACAGCGTAAGCGTTGGAACAAGATTTACAAATGAAGATGTTTCGCCAAATAAAAGTTTCGTTTTTGAGTGACAGGGAATCCGTATTCTACAGGAGTGGATGAAACACGAcgagtgtttttttaaaacttgaaaagATATGGATGTGAGAAGCTCGAAGACTGGCTACGGATATTCAGCCCTTCATACTGCTGTCATATCTCGGGACATCAAAGCTGTACAAGCACTAACAAGCACTGAAGCATGTGATCTAGAGTCCAGAGATTCCATGGGCTTTACAGCTTTGCACCTTGCTACACTACAAGGAAGTGAACAATTGGTGCAACTGTTAGTACAAGCGGGATCTGACGTCAATAGTCGGACAAAAGAGGGAATGACTTCACTTCACATCAGTAGTGAACATTCTGAGGCAGAACAAAACATTATATCTACTCTAGTAACTGCCGGATCCTGCGACGTGAACGTGCGCAACAAACTCGGTCGCACTGCGCTTCACTTAGCAGCTAAACTAGGAAACATACATAATCTGAAAGTACTTATTGACGCTGGTTGCGACAGAGGTATTAAAGACAAACTTGGATTCACTGCGGTTGGTTTGGCTTTTAAGTTTAATCAGAAAGGGAGTGCGGATATTTTACTCCACTATAAACCCCGGAGAAGTCGTAGCTCCTCCAAAGACAGTCTTCTGGATGAAAATCGAAATGAACGAGCAGTTGAATGCAAAGAtattgaaaaagaagaagagacaGTTAGGAAGGATTGTGTTTGCACTACAAGTTTTCGAGTACGGGATGTTAAAACTGTTCATTCATTGAAGCAGTCTAAAAAGAATCAAATtcagtttcaagaacattgtaACAAGGTGTTATTGAAGTTAAAGAACAGGGACGTAAAAGAAGGCGAAGAGTTGTCTTGGAAAATTAACCATCTTCTCGGAACTATGGTTACAAGGAAAAGAGACAAATTGGATGGCTTAACCTCTTACAACTCGTGGAAAACACTTCACATATTAGAGAGAAAACTCTGGAACACAATTCCAAGTTGTGTTTCTTTCATTCATTATCCTTTTCTTGTATACTCTGTTGCATCGTTCGATGCTCGACCAAGCAAACGATGCTCCCTTGCTTTAATAAGGGAGGACTTATTTGGGAGAAATGCTGATCGCCGCAATTTGGAAACGGGCTTATTAGCAAAGCTGCTGACTGATTTGAAAGGTACCTTACTCTGTTCTCGCAATCCACGGGCgtctttttgttttgaacaaagGAATTTGCCAGCAGGTTTGACCAGTTTTGACCTCGAAGAGACAAGGCCGGAGGAGGTACCAGTATTTGACAACTTTGAACACTTCGCTCAAATATTAAAAGAGCTCTGCAAATGCAAGAGCGAGAAAATGTCGTCACTGAAGAGTGCAGATAGTGAAGCTAAAAGTGCGGGCGGAATCCATActaaaagcaacaaaattttgATCGTCGGAGATTCCGATGGGCAAGAGCACCAATTGCGCAAAATAATGAGCGAATTCGGTGTGGATGAAGTACAAGACTTTTTATCCTGCCTAAGTCAGGCGATCAACACTAGAAATCCCCAACCGCCATTCGTGGAAgatttcgtggaattttttctcGAAAACTCAAAGATTTTTACATATTGTCTCAACTCAAAATATTCGTTGTTTAGGACAATATTGGACAAATATCTTTCAACTAGCAGCCTATGGATAGCGGACAGAATTGCAAGTCTTTTCCTTCAAGTCTGCGTTGCTTTGTCGAGTGAGAAGCGACTATTACTTAGGTGCGCCGGGAATATTATGCAGCAAGGCCTGTCGCACGAACATTGCGATGCCTTTTCCCTCGGGAATTGCATTTTAGTTCGAATGGGACTTCTTAAGGGAGAGTTTGACGTCAACATCGTATCAAACCTCAAAGGTCCCCTTTTAGCGCTTGAACATATTTTCGGCGAGGATTATTTTCCAAGAAATCTTGCTTCTACATTTGCTTCATTTCTTTCCAAATCGAGTCCCAGACTGTTTGGATTAGAGGAGTTGCGCCTTCGGGCTCTTGTGTCTGCGGTTACCCGAGAAGTTCTTCCTACTTCGGTGCAGGAAGGTGAAAGAGAGACAGGAAGGAGCTTCAAGCGAATCTGTGACGTCGCTGCTCTTGAACAAGACAGGGAATTACTTTCGAAGTGCATAGACTCATTATTTTTTCGCACTTTTGTCGAGTTGAAATGCAGGGCGTGGCCTGTTGGGGAGAGCCTTCTCACGTACCTCGGCCTGCTGAAAAGCGAATACTCCATTGAGATTGTTAGAAACCTGAAATGCGctttaaaacttctttttccTGTGGTGAAGCAAAGTTATTTTCCACAAAAACTTAAGGAAATGTTTTTAGTTTTCCTTAAAAAACCGAATCCTGCTCTGAATTCGTGTTCGTGGGTGGTTGAAGAGATCATTAATAAGCAAGGTGATTGGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24198 all species →	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073254449.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.