Gene detail

Detailed information of XP_073254618.1 in Porites lutea

Genomic Location: chr9:32441246...32454343
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073398517.1

tcgttcaaaaatttgttccgattttaccttttttcgcatgagcttgaagcttatattagACTCTAAGCGAAAAGTTAACGTATTATTTTTCCAGATGGCTGGCACAAAAGACGACGTTCAAGGCGTTGCAGAACTGTTGGCAAAAACGAAAGTTGAGCAAGTGAACGTCGTTAGTTTCAAAGGAAAAAGTTTTAAGTTAGACTCCGAAGATGACGCTGTAGAGGTTGTAAATGTAATCAAGGCCAGTAAAGATGTTCAGGCATTATGTTTGGAGGGTAACACCATAGGTGTGGACGCTGCTAAGGCCATTGGAGAAGCACTTTCAACAAGAAAAGAATTGGAGAGGGCACTGTGGAGTGATATCTTTACGGGAAGGTTAAGATCTGAAATTCCGCTGGCATTGggACATCTTAGTGACGGTGTCATAACAGCTAATGCTCAACTTGTTGAACTAGACCTTAGTGACAATGCATTTGGTCCTGATGGGGTGAAAGCATGTGTAAAGCTGCTAACAAGCAAAGCCTGTTACTCATTAAAAACACTTAAGTTAAATAATAATGGCCTTGGTGTTGGTGGAGGCAAGATTCTCTCCAAGGCTCTGATTGACTGCCATAAAACCAGCTCAGACGCTGGTACCCCCCTGCAGCTTCAAGTGTTCATATCTGGTAGAAATCGACTAGAAAATCCTGGTGCCACATCATTAGCAGAGGCTTTTCAGacAATAGGGAGTCTAGAAGAGGTTCAAATGCCACAAAATGGAATCCTTCATGAAGGAATAGCAGCCTTAGCAGAAGCATTTAAATCCAATCCCAATCTCAAGATCTTGAATTTAAATGACAACACATTTACTTCAAAGGGAGCAACAGCAATGGCAAAGGTGCTACCAAGCCTTAAAAATCTTGAGGTCATCAACTTTGGAGACTGCCTAGTCAAAACAGAAGGCGCCAAAGCATTGGCAAAGAGTTTACGAACTTCAGTGAATAACTTGAAAGAGCTAAACTTGTCTTTTGATGAGATAAACAAAGAAGGAGCATTGGCAATTGTTGAGGCTTTGGAGAGTAAAGATTCTTTGAAGAAACTGGAATTAAATGGAAATGCCATTGGGGAAGATGGAATTGAAGAAGTTAAGGGCTGGCTTGAGTCAAATGGTCGTCTTGATGCTCTTGGTTCGCTTAGTGATGACGAGGGAGAGGTTgacgatgatgaagatgaagaaggAGATGAAGAACTGGGTGGCGGCGACAGCGATGATGGAGAAGCGGGTGATGAACTGAATCTTAGTGTGACAGGTGTCAGCCTTAAACCAGAGTCACCGCTGCTTGGTACTgatgaagaaatagaaaaagaacTCATCAAGGTGACGAACACGGACGTGGTAAAAGATTTCCTTTTGGGACCGACGTTAGAGAGGCTGAAGAAAATACCAATCAAACAAAGGTCTTTTCTGATAGCCGAGAATTTAAGGGATCATTTACATGATGCAAATGAAGTAGCAAGATTTTTTGTGTCGGTTTGCGTCATCCTCAAAGATGATAAAACATCCCTTTTGGAGTGTTCAGaGCCAATCCTGAAGACAGCCTTTGAATCTGATATGTGTAAGGAAGAAGGTTTAGTCTCCGCCCTTTTGATTCACATGGGTCTTCTCAAGggcGAGGAGAAGGTTGAATCTGCCAAAGACATATCCGGTCCACTGACGGCTTTAGAACATGCTGCTAAACAACCTTATTTTCCCACACATTTAAAATCCTTCTTCATcgcttttatttcaaaGCCCAACAAACTCTTGGAGTCCTGCTCAGAGGCTCGTCATAGATTTTTACAGACGCTCTATCAGATTTGATCGTAGCGCGCCGGGTCCTATTCACCGCTCATCTGAAGCTGCTCCTTCCTGTTGTTTATCCAAGAAACTTGAGTGAAGAACAGAAGCCCAAGATATTTAGTTTAACTGCATGAAATGTAGTTGTCCATGGCGTGTTGTTTGATTACAGTAAATTCTCTTTTATTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR027038 all species →	Family	Ran GTPase-activating protein	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24113 all species →	RAN GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14319	RANGAP1; Ran GTPase-activating protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.