Genomic Location: chr1:36998876...37012175
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140949576 |
| Transcript |
| rna-XM_073398743.1 |
| Protein |
| XP_073254844.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004573 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16503 all species → | zn-ribbon_14 | Zinc-ribbon | Family | Interproscan |
| PF01171 all species → | ATP_bind_3 | PP-loop family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR032442 all species → | Domain | Cytoplasmic tRNA 2-thiolation protein 1, C-terminal | Interproscan |
| IPR020554 all species → | Conserved_site | Uncharacterised protein family UPF0021, conserved site | Interproscan |
| IPR011063 all species → | Domain | tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal | Interproscan |
| IPR035107 all species → | Family | tRNA thiolation protein, TtcA/Ctu1 type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11807 all species → | ATPASES OF THE PP SUPERFAMILY-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0002143 all species → | Biological Process | tRNA wobble position uridine thiolation | Interproscan |
| GO:0002144 all species → | Cellular Component | cytosolic tRNA wobble base thiouridylase complex | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14168 | CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 | EC:2.7.7.- | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
