Gene detail

Detailed information of XP_073255204.1 in Porites lutea

Genomic Location: chr10:30171823...30179956
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073399103.1

ACGAAGATGGCGGCCGGAGGAGCAGAAGAACACTTTGCAAAGAAGTTGGCAAATAACGAGAAGAAAATCCGAGATAGAGCCGTAACCAAGCTTCGTGCTTGGATAAGAAGCCGACCAAAGGATGGGCCAGgTTTTGGTGAGCTAGATTTAATGAAAGTGTGGAAGGGGCTTTTTTACTGCATGTGGATGTCAGATAAACCTCTAATCCAGGAGGAACTTGCTTTAAATATCTCTCAGCTTGTTCTGAGCTTTAGGAATGAGCAGTCAGctgttttgtttatcaaaacatttttcaaaacaatggaaagggAATGGCATGGAATAGACAGACTTAGactggacaagttttatttGCTGATTCGTTTCTTTGTGAAAGGAGCTTTTAATTTTCTCAAGAAAACTGAATGGGAAGACAGGTGGGCCACAGAAGTGAGCAGCATTTTTCATGAAGAGCCTTTGAATCCTACGAGTCAAGCGGTTCCTGATGGCATAAGATTCCATACAGTGGCTGTGTACTTGGTTGAACTTAAGAGTGTTGTTAATGACCAGgtCAGCTCTGATGTGTTACACAAGCTTTTAGATCCACTGTTTCTTCTTGCTGCAcattcaaaaaaTAAAACCGTCACCAACGCagtcaaaaaaagtttgtttgagGAACTTTTTGGAAGTGGTACAGACGAAGCAGATAAGAATCAAGGAAATTTAAAGAACAAGGTTGATTTTGCCTCAATCGCTGACAGATTATTTACCTTAGCAAGTGATAGGGAAATTCTTGGTCGAAATAGGAACCAACTTTATGACTGGGTTAAACGGCTAAGAAAGCAATCAAGAGGAGAATGCAAGGATGGAGAGCTTTTGCAAGAAGGAGAAACCTTACATGGGAACACTGTGGGATCAAAGGGAAAGACTGCTTCATGTGAAACTTCAGAGATCACAAATATTGAGGATGGCATGAGAAGGAAAAATATCTCCAGGGAAGAAGAaacaaagagaagaaagaaGCATGTTGAAGGAGAGGTTGAACAGGAAAATGATGCAATCAGAAAAAACGTTGctgaagaagaaaggaaaaagaaaaagagaaagagaaaaattaaggAACAAAATTTGAACAACATGTCTTCAAATCAACAAGCAGTTGTTGAAGAGGTTAAGGATGTTGAGCccacaaaaaagaagaagaaaaagtctCAAAACAATGaaggaaataaggaaaaaagactGGGTGATGATAGGAGTAATGTTGAACAATTGGTCATTGTCAATGGACATGGCGATAAAAAAGGTGAACCACAAGAAAGTACGTCACTAGCAAATGACACTGCCACTATTAATGGTGATACAACATGCTCACCTGAAATTTCTGATCATCAGGAGTCAAATATTGTTGATaaaaaggttttgaaaaaagCAGCAAGTCCTAATGAAGAGCCATTTGCAAAGTTCGAGAAGAATTTCACTCCGCCAGCATTTTTTAGAAAGTCTCTCCGAAAAACACCAAGAACAGAGCCACAGAAAAGCAAGACAAGTCAAGAAAAGaatCAAACACCAACTTCCGTTCCAGCCAAGGGATCACGGAAGAGAGTTAGAATTGAGATGTCTAAAAACACGGCACACACTACACAAGATTATCTACGCACTCTAAAACAAAGTCCTAACATTCCATTTGATGCGCAAAAGACACCAACGCAGGGATTACTCAAGTCACCACCCTTGCCTAGAAGAACCCCACTATATGTCAAAGTAAAGAGGTCCACAGACACGCGACagaaacaacagaaacaatccAAGTCACCAAAGAGACCGAAAGCAGCTGACTTCTTTTAACACTTGCACTTTTGCCTTATTCTGCGACAAAAGTTGTACAatcatgaataaataaatttgcaCCATGCAAAAAGTGCTGCTGAAGATTTCCTGAAAGTGTCAGCGAGGTTGTGAAAAAGAGATCTTTGACCATCTTgctttcatttgcttttagccATCTATAACAGTTTTCACAACAGACCGGGTTACTTGCTCAAGTACATTATACTTCTGTCTCTGCCTAAAAACCAGGGGTAGGGGTAGGGGTTGGGGTAGAGAGTGGAATCGCCACCCACCCTTTCCCTCCTGACATGCACAAACAGTTCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05997 all species →	Nop52	Nucleolar protein,Nop52	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010301 all species →	Family	Ribosomal RNA processing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13026 all species →	NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14849	RRP1; ribosomal RNA-processing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.