Gene detail

Detailed information of XP_073255259.1 in Porites lutea

Genomic Location: chr10:24717379...24733701
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073399158.1

GCCCCCAGAAGATTGGCTCCACAGAAAAACAATATGGCGTCTGTTCGACAAGCAGATACCGCATTGTGGCTTCATAACAAGTTATCATCGGACGATTCTTGGTCTGGCAGCAGTTTGCGTTCGCTTCTGACTCACGATGTACTTCGTAATATTCCAGAATGCTTTCATAGGCTGGAAACGCAGGTGAAAGTTAAACTGTTGATGGCCTTTCTTCACCTCCCTCGTCGTGTTATCGAAGAAACTACCGCCGAAATGAGCGAAATTTTCGAGATTGGAAGCCACGACGAAGATGAATGGGTCCGTGTTTTATCAGAGATTCTTAAATACTACCCCAGTACGGGAATGCTGAACGTTAACCTCGATGAAGTTAGTCCCGTGTTTGCAGAGGTGACtcaggaaataaaaaagacaatggcAAACCTTCCAGATAGCGGATCAAGTTTTCTTCCCTTGGAATGCTTATATTTAAATAGGTCTGCACTTGTTGCCATGGTTGGTCCACAGCCCCCACTCTCTAAACACTTCACACTCAAAAGAAAACCCAAATCTGCTGCCCTTAGAGCAGAGCTCACACAAAAAGCCAGTGAAGCAGTATCTGCTCAGAAAAAGGGAATCGTTGGTTCTGGAAACAAGCTTCAGTCTCCATCAAAGAAGTTTGAAGCTCCTGTAAGGGTTACTCCGAGAACATCTAACCCCGCAAGTTATCGTCCTGTGCTGGCAAATAGAGCTACTTCATCGAGCAGTTCATCAAGGAGTATTATCTCTGCTGCAACACTTAAACACCATGGACGAACTAAGCTTTTAGACATAACTGAGCAGCCAATTGGAGGTGGACGAGAACttaagagaagaaagaaattaGCAGACTCTGAACATGCAGAAGAGGCTAAGCATAAAAAACTAGACAACACAAAGCCACCCGAACCAAGCACACCCAATTATGCGGCAGGGCTGACACCTGTCACTCAACCATCAAAGACACCTTCAAGTCCAGAGGTACCATCAGCAAGCATGGCCCCACCATCATCAACACCATCCTATGTGCCGCAGCAGGCAGCATCAAGCACATCACTGTCTCCACCATCAGACACACTCAGTGAAAGTACTATTAACCTCAAGAGAGAGTTAGAAatGCATGTGGAACATCAGCGACAGTTGATGATGagagaaaaacaacagaaacaggCTGCAGCTGCAGCATTAGCAGCTACCTCCTCGACGTCAACAACACCATCCGCTGCAGATTCTACAAGAACACCATCTGCAGCCTCTCCTGGTGTCCCTGGCAACAGTCAACAGCAACAGGGGAGTAAACGACAGCTTACCCTGACTAGAGACCAAATGTTGGCTGCTCATGAAATGTTTAAGAATGCAAACCGTGTGAGTCGAGCAGAAAAGGCTCTTATTTTGGGATTCATGGCTGGTGCACGAGAAAAACCGTACGCGCATCAAGGACCCATTATTACTATTAAGCTGAGTGAAAACACCGAGAACGTCACAGCATCGGATGGATCACAGCAGACCCAGCTTGTAGAAATGTTATTTGAAATGAACTATGACACAGGACACTGGCGGCGGCTAAAACGCACCAGGGTGGTGTCAAAACAAGGAGCACCGGGTGGGGGACCATCGCAGAAAAACTGAATCACAGGATACCCAGGTTTACAAATGTCACAGAATACGcagcttgtaaaaaaaaacattgcaaacGAGCTATGGCAAATATCACTTGAGTCTTAATCTAAACAAGGAGCGCCGGGACGACTGCAGGAAAACTGATCGCAACATAGTCCAGGTTACAAAGGTCTCAGAAGACCCAGCTTGTAGAAATgttatttgaaataaactttGACGGAGAGTAGCGAGGAAGATTGAAACCTACCGGCATGGGATGTAAACCACTGCAGAAAAACTTGTCGCAGCATACCCAGGGCTACGAAGGTCACCGCAGACCCAGCTTTTAGAACTTATATTTGAAATTCATTATGACACACAACAATCTGGCGATCGTTAGAAGTGTCGAAACGAGTCAGAACTAGAAAATGCCAATGGCGGCCCCTTGGCTCGTGAAAATACAGTGTAGCTAATAACGGCGCACCCACGATTACAGAGATTGCAAAAGCATGATGTACATGTAAACATCTAAATGTCAAAGTAAAtgatctttttattaaaaaaggaGTGTAAAAAGTG

Protein

Pfam domain

No Pfam domain signature was detected for XP_073255259.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR037517 all species →	Domain	Hepatitis delta antigen (HDAg) domain	Interproscan
IPR052828 all species →	Family	Negative elongation factor A domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13328 all species →	NEGATIVE ELONGATION FACTOR A NELF-A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15179	WHSC2, NELFA; negative elongation factor A	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.