Gene detail

Detailed information of XP_073256992.1 in Porites lutea

Genomic Location: chr1:42647855...42671451
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073400891.1

AACTACGACGCATAACTTCTCTTCGGATTACCACGTGCTTGTGTGGAACATTTACCGTCGAGTTAAAGTTTGTAAAGTTGTGCTAAATTTCACGGAAATACTCATTCTGCTAAGATGACTTCGCTTGATCATTTAGAGATGTCAGGTGTTAATGAGTCGAAGTCTAGCCTGAAGCCGGACGATGGCCATACCAATCATCAAAAGAAGTTTTACCACGTTATTGTTGCAAAGTGGGAAGACTCACCCGAGATGAATAAGTTGAGTGACCTGTGGGAACGGCATGGTATGACTGTGATCATGATCTGTGTCACTGTTTTACTGCTGATCTACAGCATTGTAGCAATAGCTGTTAGTGGATTTGAGCACGCTAAGTGGCTCTTTGGCATAACAATGTTTCTGTGGTTCTGCATGACATACATGTTTATCCGGGATCATTGTGGAGCTGACATATTCAGAGTGTGTATAGAACCTATTGTGAATGCTGTGGAAAGCCGGTGGCGGTATTTGAAATGGGTTTTTCTTGTGCTTGTTTTGGTGGCTCTTGGAATTTTCTTTGGACTTGACACTGCAAAGCAGCCAGAGCGGTTTGTTTCTATAGCCGGGCTAGTTGTTAATATCCTGTTTTGCTGGTTGTTTTCCAGACATCCTAGAAAGGTTAAGTGGCGCCCTGTTATTTGGGGACTGGCTTTGCAGTTCATTTTTGGTGTCCTCATTCTGCGGACTTCAGTTGGCTTCAACGCATTCAAAGGACTTGGAAACCAAGTCTCCATATTTCTTGATTACACCAATGTGGGCGCTGAATTTGTGTTTGGAGCTGATTACACAAAACACTTCTTTGCTTTCAAGGTTCTTCCTGTTGTCATTTTCTTCAGTTCTGTGATTTCTGTTTGTTACTACATTGGTATAATGCAAGTGATAATCAAGAAGATTGCGTGGCTCATGCAGAAGACCATGAAGACATCTGGTGTAGAGTCTTTGAATGCTGCTGGTAACATTTTTATTGGGCAGACTGAGGCACCTCTCATGGTCAGGCCTTTCCTTGAGCATGTAACAATGTCCGAGCTTCATGCCATAATGACTGGAGGTTTTGCGACCATTGCTGGGGGTGTACTAGCAGCGTACATTGAATTTGGAGTATCAGCTTCCCATTTGTTAAGTGCCTCTGTGATGTCTGCCCCAGCTGCTCTTGCCATCTCTAAGTTAATGTATCCTGAAATAGAAATACCAGAGACTTTGAATGAGGATGAAATTGATCTTCCTAAGGGgaATGAAAGAAATGTCATTGAAGCCGCTGCCAAGGGTGCCTCTACTGCCATTGCATTAGTTGCCAATATTGCTGCCAATTTGATTGCATTCCTGGCATTTCTTGCATTTTTCAATGGAGTGTTGTCATGGTTGGGGTCCATGGTTGGGAAACCAGAAGTCAGTTTTGAGTACATTTGCTCGTATGTTCTTCGACCCGTTGCCTTCATCATGGGTGTGGAATGGAGAGACTGTGATGTTGTTGCTGAATTACTGGGTATCAAAACCTTCCTGAATGAATTTGTTGCGTATGCCAAACTTTCTGAGTACATAAAGAACCGACAGGCTGAAAATGGCTTGCGTACCATTTCGATTCGCTCAGAGATTATAGCAACATATGCGTTATGTGGTTTTGCCAACTTCTCCTCTATCGGAATCCAAATTGGTGGCATGGGGCCACTTGCGCCATCAAGAAGATCAGACATGGCTCGTGTTGCTGTACGTGCACTGGTTGCAGGTACCGTAGCCTGCTTCATGACAGCATGTATTGCAGGTGTTCTTTATGATGAGACACTGTATGAAAGTGCAGTTGGTCTTGCAACCACTGCTGCCACCATCAATGGCACAGTAATACCAACCACAGCCTCTTAATTGTAGTGTACATTTTTTCTGTTAATAGCTTATTACTTTTAGTCTTTGGGGGTTGGGGGTAGGATTAATTTTGTCATGTAACAAATGATATAAGTACTTTCCAAGATGTATCATGAGATCATTATGCTATCAAACAAGTCAGTCAGCAATTTTTATAGGGAGTGGGTGTGTTTGAAAGCCTGTTTACACTGTGCAATTGTGTCGAAAGGAATGTGCTTGCAGCAAAACTACAACCCGAATCCTATCATGCAAATCAAGTCAACAGCAATTGCAAATCAGTTTTAGGACTGATATACAAAATGCGATTCGTGTTGTAAACGTATCGCAAGCACATTACCTGTGACTTAGTTGTGCTGTGTAAACTGTTTAAGTTTGAGAAATTATCCAAAGTAGTATCACAAGAATTATTAAGAACAAAAAGTGTTTGCACCACCAATACTTTTGATCTTTCTTGCTCCTGTATGTTTACTGAAAAGCATCTTTTTTAACCAAGAGTTAAACAAGGGTAATTGGTTTCCTTTCttatgttttttattatttcatttcgcaagtatgatttttttattcttgcgCATTATTTTTGCTGAAATAGAGACATATTTTTACCAAAATTCCACTGGAAAATCGTTTTGAAATAATCATAATAGCTATCGTTTTCTCAAGCAAAACATCATTTTATACTCAACTGTAAGTAACAAATGTCATTTAGTGTACTCTCTTGTAAATAAAAGTATCTTCACGTGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07662 all species →	Nucleos_tra2_C	Na+ dependent nucleoside transporter C-terminus	Family	Interproscan
PF01773 all species →	Nucleos_tra2_N	Na+ dependent nucleoside transporter N-terminus	Family	Interproscan
PF07670 all species →	Gate	Nucleoside recognition	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011657 all species →	Domain	Concentrative nucleoside transporter C-terminal domain	Interproscan
IPR008276 all species →	Family	Concentrative nucleoside transporter	Interproscan
IPR002668 all species →	Domain	Concentrative nucleoside transporter N-terminal domain	Interproscan
IPR018270 all species →	Family	Concentrative nucleoside transporter, metazoan/bacterial	Interproscan
IPR011642 all species →	Domain	Nucleoside transporter/FeoB GTPase, Gate domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10590 all species →	SODIUM/NUCLEOSIDE COTRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005415 all species →	Molecular Function	nucleoside:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11536	SLC28A; pyrimidine nucleoside transport protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.