Genomic Location: chr11:9480739...9487006
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140951804 |
| Transcript |
| rna-XM_073401154.1 |
| Protein |
| XP_073257255.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008289 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09377 all species → | SBDS_domain_II | SBDS protein, domain II | Domain | Interproscan |
| PF01172 all species → | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein | Family | Interproscan |
| PF20268 all species → | SBDS_C | SBDS protein, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036786 all species → | Homologous_superfamily | Ribosome maturation protein SBDS, N-terminal domain superfamily | Interproscan |
| IPR018978 all species → | Domain | Ribosome maturation protein SDO1/SBDS, central domain | Interproscan |
| IPR039100 all species → | Family | Ribosome maturation protein Sdo1/SBDS-like | Interproscan |
| IPR019783 all species → | Domain | Ribosome maturation protein SDO1/SBDS, N-terminal | Interproscan |
| IPR018023 all species → | Conserved_site | Ribosome maturation protein SBDS, conserved site | Interproscan |
| IPR037188 all species → | Homologous_superfamily | Ribosome maturation protein Sdo1/SBDS, central domain superfamily | Interproscan |
| IPR002140 all species → | Family | Ribosome maturation protein Sdo1/SBDS | Interproscan |
| IPR046928 all species → | Domain | Ribosome maturation protein SDO1/SBDS, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10927 all species → | RIBOSOME MATURATION PROTEIN SBDS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:0042256 all species → | Biological Process | cytosolic ribosome assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14574 | SDO1, SBDS; ribosome maturation protein SDO1 | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |