Gene detail

Detailed information of XP_073257516.1 in Porites lutea

Genomic Location: chr11:7976377...7983742
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073401415.1

CGGCGTGACTTGTCTCCGTCTAAGGCATTTTTAGATGTAAATAAGGCGAACACTAAAGGTCTCTTCCCAGACGTCCGGATTGTATCGAAGAGGTAACAATACGAAATTCAGAGGCAATGAAGCTTATTATAGCGATCTCTTTTGCCCTGTTTACTTTAGCCAACTGCGTTTGCATTCAAAAAGAAGAAGGAGGGCCAGTCCATTGCTGTGATCAGAGAGAACATGGCGGTTCCTTGCGATGTTGCGCGGGGCGAAACAGCAGTTGCGGCATGGAGAATTTTGTTCACAGCGCTCTGTGTTTTTGCGATGAATTCTGTGAAGCCGCTGGGGACTGCTGTCCGGATTTCGAGAGCGTAAAAGAGCCATGTGGATGGGGAAAGCGGAAGCGAGATTGTGAGGTAAGCAAATGGTCAGATTGGGGTCCCTGCGAGCCGACATGCGGTGTAGGTGTTAGTAAGAGAACTCGTACCGTCATTTTCGTGCCATTGAACGGAGGCAAGGAATGTCCACCACTTACAGAAAAGAAAGGATGCCTCAACAAGATTTGTGGAAGGGAGGCTGGTTTAGCGCGCATTCTGCCTCACAAGTACGAGAAAGATCGGGGGATCTCAAAGTGGAAAAGCATCAAACCAGCATCGAAACAAGTTAAGACAGAGAAACCAAAAAGACCGAGCTACTGTGTTAACTACAAGGTATTCTTCAAACACCCTCATTGCAAGAATACCTGGGCAGACCAACTCGACCCACAGAAGCCAATCTGTGTGGAATGTCAGGATCACACTATGAACAGACACGGCAAATGCAAGGGAGAAGGGATTAGTGCCGAAATAACTCTCTGGGAGGGGGTGGACCTGCGGAGTTGTTACGGTGGTTGGATGAAACTTGGACCGAGGATCCCCAACTGTAAATGTGAAAACGAAGAATTTAACAACTTTATATTTGTATAAAGTCAGTTAAAATAACGATTtagcttttatttcttttgctgTGTTTAAATCATTCCTCGTCGTTAAAAGGATGTTACTTGACTCAGGTTCATTGAATATGTCTTGGTACAATTCCGTATCTATTGCTTATATTTACTCATAAATAACTCAGCGATATTCAGTTGATCTGAGCGAATAATATTGTATAGTTTCATTTTTGTAGCTAAGCATATAAGTGAtaaaaaataacttgttttcgcATAACTCACTCTCAGCTTACATCTTCCACGGCTTGTGCAAAATAATATGTCGCTAtctttttatcacattttagtAGCTTCATACGAGACTTTTTGCATATGCTtaaagaggaaatgaaaaatgggaaagaCTAATTAATGTGACAACCCATTTTGCAATATGCACTAACACAATTTAGTCTATCTCACTTTCTTAAagactgaatcattggataacgCAATACTAGAGCTcggattggcttagccatcacggaatattcaacaattattcctcgagcccgaaggggctctaagtcaatagcctatgaggccgaaggccgcaTGAGCTTTTGGCTCAGACTGAggcccatgagggcgagaggaataattgttttagtacaatttgaactagtttttcaaaaatatcgagaataaaaaacttttagctagttaaagctagactttgatccttttttgctgccaaaaagcccacgcttttcgctactagtgggctataacatatagcctagtagtagctcaaccaatcagaacgcagcattgataatagaccactagttggattttactaacagcCATTATACCAGGCTCTCCAAGGTAACTGTAGCGTCTGCTCGAAATtgaaaacaagctgaaaatcggttatttttacaaataaagtagggaagaattctcgatattctttgggcgtttttaataaaataattattccactcgcgcttgttggatatgagatgattataaccaactcggcgctacgtgTCTCATTGGCTAtgaccatctcatatccaacgcgcactcgtggaataattgttaattagtttATCTTAAAGGTTTCTAAGATTGATAAGATTAACCTAAGTGCTATTAGATGTTCCTTTACTCTCTCTTGACACACACTTCCATTAATTGGTTTGAGTTGACAATGACATTCAGTTCAGAGTAATTTAATGATAGCTTCTTCTCTGGTAAGTAGAGGTATACGTAAAGAAAAAATGGGAGGGATAATGGAAAGGGTTAGGTAAAACGAACATTTACAAATTATTGCAGCTTTGCTAGTATCATATATAATTTAAGCTatgcttttattttttgattaaaCTGTGAACGTTCAGTAGTTTTTAGTGGTACGTTGATTGGACATTATTGTTTTCTGAATTTAAGTTAAGAGCGTTTCTACAACCTTAACATCTGTAGACTCAAACATTCTGGAGCAAGACCAAATCCCAGATATAAAACTTTCTGAAGTGAGACTGCAGAGAGGAAAACTAGGAATAATAAAGTGTGCCGTGTTAGGGTAGGAACTTTAAATAGAGCGCTTTACGTGCAAATGGAAGATATTAAATTCAGAATTTAAAATCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19028 all species →	TSP1_spondin	Spondin-like TSP1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044004 all species →	Domain	Spondin-like TSP1 domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR039942 all species →	Family	Somatomedin-B and thrombospondin type-1 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20920 all species →	RPE-SPONDIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_073257516.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073257516.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.