Gene detail

Detailed information of XP_073258115.1 in Porites lutea

Genomic Location: chr11:14751157...14767100
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073402014.1

ATGACTGACTTCACTCAAAAATAAAATCCGAGGAAAATTTCGTTTCATTTTTTCGGTGAAATTACCTATGTGCGGCCCAGAAATACAGGTTCAATGTCCATTTCCCTGGTAGTATTCAGATTTGAAGTTGCCGACGATTTGCCTTTACCGCAGGCATTGGACTATTGTGCCCCAGGGTTTAAAAGCACTAGTCAAGAAATGTCTGAATCAGATTCAGCAAAAGGTAAAGGAGAGAATGGAGAACGAGAGGAAAAGGATTCAGTGTCCTGTGAAGAAAAGATGAAAGTCCACAGGGGAGAAAGATATCTGCATGACATTCAACTTGAAACGATGGTTAGAAGTAGTATTGACAATTCTATGGAGGAAGGTGTTAAAGATGCACTTGATAAAGATGAGAGGGCAAATACAACCAGTGATTTTCAAGGAAAGATAGCATTCTTCTGCGGAAATCCAATGGTTGAAATAATCAAGGGCATTATTCACatctataaaaacaaTGAGATGACATCCTTAGCTAAAGGTGTTCAGCGGAGTGAGATGATTTGCATGTTAGCTGTACCAGCTAAGATGACTTGTATTGATCTTATGTGCTTTGTGGCTCCTTCTGAAGAATTTATTGAATGTGTCAAGATCATCAGAGACTCCACACCCAATCAGTACATGGTTCTTGTCAACTTTAGAAATCAGGAGCTGGCTGATGAGTTCTACAATACCTTTAATGGTCAGCCTTACAATCTTATAGAGGATGAGGTTTGCCATTTAGTCTATGTAGCCAAGGTAGAGACCATGAAGCTGTCAGAGGGAGCCAGTCTTCCATGTGTCGGTCTAACAGAGCTGCCAAAGTGCCCGGTGTGTTTAGAGCGTATGGATGAATCTGTTGAAGGAGTTTTAACCATTCTCTGTAATCACTCGTTTCACGGAAGCTGTTTATCAAAATGGTCCGATACGACTTGCCCAGTTTGCAGATATTGTCAAACTCCACAGCCCGTGGACGGGAACAAGTGCTTTGAGTGCGACTCTAATGAGAGCCTGTGGATATGTCTCATATGTGGCCACATAGGATGTAGTAGATATCTAAGGTCGCATGCGAAGAGGCATTTCCAAGAGACTCAACACACGTATTCTTTAGAGCTTGGGACCCAAAGAGTATGGGACTATACCGGAGATAACTTTGTACATCGTCTGATTCAGAATAAGACTGACGGGAAACTAGTAGAATATGGATCAGGACAGCAGGTTATGGATGAAGAAAAGATGGATTCTTTAACGCTAGAGTACACGTACCTTTTAACCAGTCAACTAGAAAACCAAAGGCattatttccaagaaaaaatTACACAGATAGAAAAAGATGCCGCTGAACAGGTGAGTTCAATGGAAGAACGGACGAAGAAAACACTGGAAGAATGTAAAAAACTGGAATTGAAACTTTCcgaagctgaaaaagaaaagaaaaacgtggaaaagaAATATGCGCAGGTTGTAAACAGGGTTGGGAAACTAGTCACCGATCTCAAAGATGAACAAGAGCTAAACAGGTGTTTGCGAGACAATCAGAAGTTATTCCAAGAGAAGTTGTCACAAACGGAAGAAAAGTTACAATTGGTAGAAGCTGCGAAGAAACAGGAAATCGCTGATCTCCAGGAGCAACTAGCAGATCTCATGCGCCATCTGGAGACACAGCAAGCGATAGCCAGCGCCTCGGAAGAAACAAGACAGGAGTTGCAAGAAGGTCAAGTATTTGTGGGTGAAGGATCAGGTGGTACACACcacacaaagaaaacaaggcgAAAGAAGCAGTAGAATCGCCTGTCAGACATACCTTAAAGTCAACTGTTCACTCTTTGCTTACTCAAATCAAAGGAGGTCTTGCTTGAAAGGCGAAGCATAGCCATTACTTTGAGCATTATCAACACAGCCCAGGGTGGGATACGCGCTCTCTTAACAACTGCGACTAAGATATTAATTTATACGTCTATGTGTTTGCATGCAAAGACTGTAAATGGACTAAATCAGGAGCCCATCTCCTGACTAAATCAAAGTATGAAGAAACTTAACAAGGGCGGAGGAGAAGGGTTGTCCAAATTCAATCGCGCAACCTCGTGATCGACTGGATTACCAAATTCTAGtgctgaaaatgaaaaaaaaaacttacggGAAACAGAAGCAAGTTCGCGCAAAATGCGCGCAAAatgaatgctacgcgcgctgtgattggtcgttgtcCATGATCTATTGGAGTAGACACACTGATGACgtcaaggcaaacttgttttctttgttttgtcaaACATGGCGCGCGGCTTTGAAAATGTTTGCGTGATAATTTCGGATTAAGCAAGTGAAAGCCCCGAAAAAAGTTTAGCTGGAGCTGTTTACAAGTAAGAAAAACGGAGAAACCGAGACAGGAGATTTCTTGGCGACTCAAAAATACCTAAACTGCAAGAAATCCTCACAACAGTTGCACTCACCGCTGCGAGAGATTGCGACGTTTTGAATACATTTGCGCGATCACTCTGCTTTGAGAACGTGAACGCCTTGCGAAACGTCAGGGGGAAACTGTCCTTACCTCATttttacgtcatctgtgatcCTTACTGAACAGACGACAGCTAAACTGTAGTAT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	UBD\|ZnF\|ZnF_UBP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07576 all species →	BRAP2	BRCA1-associated protein 2	Family	Interproscan
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047243 all species →	Domain	BRCA1-associated protein, RING finger, H2 subclass	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR011422 all species →	Domain	BRCA1-associated 2/ETP1, RRM	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034932 all species →	Domain	BRAP2, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24007 all species →	BRCA1-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10632	BRAP; BRCA1-associated protein	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.