Gene detail

Detailed information of XP_073258252.1 in Porites lutea

Genomic Location: chr11:5960198...5965835
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073402151.1

CTTgaactttaaaaagttcaagATGGCGCTCGCTGCCAAAACTGCAAGATTGGCCTTAGGAACAAGCCTTATAGATGCCCAGTACTTGGCTGATAGAGTGATTTTCATTAATAACGATATCATTGCAATAAACAAACCATATGGACTTCCTGTACATTCTGGTCCTGGTGTAAAGATATGTGTGATGGATTTGCTTGATGAGTTTACAGAAATAAAGAAACTTGGACAGAAACCAGAGCTGGCACATAGGCTTGATAgAGATTGCAGTGGCACTCTTCTTTTCACAAGATCACAAAGTGCAGCCAAGAAAGTTGCAGAAATGTTCACAGATAGAATAGTCAGAAAACTATACTGGGCCATTACAGTTGGAGTACCATCATTTGAAGAAGGAGAAATCAACATTCCTGTTGGGGAAGCTAAACTTTTTAGTGGACATCGTATTGTTACAAGGCAGGATCTGGTTGGAAAATCTCCTGAGATATTGAAAGCTGCAGGCTTCAAAAATGCAGTAACAAGATTTCAAGTTTTAGACACAAATAAGACCACATGTGCCCTTTTGCAACTTGAGCCACTAACTGGACTCAAACAGCAAATCAGAGTCCATGTGGCTGAAGGTCTCAAGTGTCCAATACTGGGTGATCATAAGTTCTCTTCAGATGCTCGTGAACCACAGGTGTTACCCTTGCGCTTACTTCAGCTTCTGCGATTTCAAGGTGTAAAAAGCAAAACAGATCCCAATGCAAAGGGAAAAATCAGACCATGGCAAAGGGCACTGATACCTCTTCATTTACATGCAAGACAACTGATTCTACCACAGTTTGATAAAGGAAAAGACATTATTATTTCTGCACCACCTCCAGAATATTTTCAAGAAACACTTGAAAAATTAAGTCTTCACCCCAAGAAGGAAAATATGATTCTTTCTAGACATGAAGCTGAATATTTAAGACTTAGGAGACTGGGAAAGTCAACCAAAAGACTTGTTGGATTTTAACTTAATGTAACTGTTACCAGGCctgggttgttcaaatgttggatagcactatccactagataaatcACGATTCAGTAGATAAGTATTACAACCAATTACTGTAGGGAAACCAATAATATTGAACATTTACCCAGTGTATAGCTttatctaccttttgaacaactgcaCTGCAGGAAGAAGAAGAGTGGTATTTTCAATGACAATGTATTatccaagaaaaaaataattattaaccTTGAAGGGTTGAAAGTTGCctttaaagtgaaaaaaaaaactactcgaagtaatcggatgaaattcaggctaatgtTCACAATCTATGTAATATATAATTagcattttattttataattaaattACTGTTAAGATGCGAACAAGATTGTGGATGAAAggtaaaaaagtattttatggGATTGACCTTGTGTGCAAGAGGCATTTCCATGAGGCCTTTTGACATAAAATTAAGAGTAACGTTGCCAAAGCACTGCAAagtcaaattattattatttgtataatatttattattttcaaataatatacCACACACAATTAAATTTATTTGGTATGTTAATATTGTTGTTTACACTGTAATTATTGGAAAATAGCCCCTAGATTTTCTTCAGTTTATCAATGTTTGAGGCCTTCTGCCAAGTTACTAAACTGGATGTCTATGTGGTCTTGGTTTTGACATGCTATTACTAAAAGCTATTTTATATAATACCTTTATTTGATGTCAATTGATATAATATCAACaacttacaaaaattaaatacGAAACACTACcaaatttaaactaaataaATACTATATACACTTTATTTCCTTGAAGTGACACCAAAAGAAGCCAAGGTTTGGTTTTCTACTAGCAGGTTCAAGTTAAcagggctgaaaaaaaattactgcgGGGCAAGTAACCTTTTCATGTTAACTTGCCTAATTGATAAGGGCCCTGGCTAGTTGTCTTCTAACATAAATCGTAATGAATCAAACAACTATGACAAGTAGCAAATTGAGAGCTGCTTGTCcttggaattcaaattacagaactttcgaagtaaaaattgattttgttactTTGTAGTCAGATGTGCACTGAGGTCTGCTTTTATATTTATGCAAATAATTTATTGCCCATCAAATCACTTCTTCTATTTCATTGAAAATGGGCCAATAGGCTTTTATAACATATCATAACAatattataatataataatgttatgttatgcaaataataattattattgctcAGCAAATCATTTCTCCTGTTTTCATGAATAAGGGCTAATAggcttttattttaaaagcagtGGCAACAACTAGGGACAaaacttatttaaaaataaatggaGGAGCAAACCAAAAATTTATTTTGGCATATACCAGTCATGTACATAGAAGAACTCGCTGGAACTAGCTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455 all species →	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073258252.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.