Gene detail

Detailed information of XP_073258535.1 in Porites lutea

Genomic Location: chr11:10633279...10654712
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140952966

ATGGCGGACGAAAGTTGCGACAGGGACGATTTTGCTCAGCAAGAAACATCTTTGGACAGCAACCAGGCTGTCTTTCCAGATGAAGAAATTAAGCAAGAAGTTAAGCAAGAAGTATCAACTCCTATTCCTGGCTTTCCACCGTTGTTTCAGTTCGCGAAGGTGCAAGCAGAAGCCTCTTCATGGACTTCTACTTCGTCGACAACAACAACTGCTACAAGTTGTGGAAGCTATGCAACGTTAGACACAGAGACTAAAGAGCAGCCAACAAGTTCAGAAACAGTTAATGCTGTTGAATCAAGCTCTATGGATGGATTGGGGTTGTCAAGCATTAGTGAAGCTTCTGATGTTGCTGCGAAAATGCAAGAAGAATCGTCTTTGGGCGACGACAAAGTTAACGAGGAGGGTGACAAAGATGATGGTAAAGATGGTGAGGAGGTGGCAAACGACGAACCGGATGAAGAAGAGATTGAATCTGATCCTTATTTTTACATTAAACGGGATGAATTTACTTCAGAGATCTACAAAATTGAACTGCAAAATTTACCAAGGAAGTGTGGCTACAAGCAATTCAAGAAAATGATTGCCAACCGGCTCAACGTGAGACCAGTGAAGGTGAAATTGCCTCCAGGAGCAACCCATGCTTATGTGACTTTCAGGAATGAAGAAGAAAGACGGTTGGCTATCAGATCATTATCAGGACACAAGTGGAAAGGAAAAGTGCTTTCTGCCAAGACGGCTCAGCCTCTACCTGATCCACTTGCCGTTCAAAGAGCTGAAGGAATGGCAAGAAAAAGGATGATTCAAGATGCTGCTCGTTCAAACATTGATGCTAAGAGGATTAAAGTAGATGATAATGATGAGGGTGAAGAACTTGCTATTTCTGTCAGGTTGAACCATGTTGTCACTCCATTGTGGAACCAGCCTTACAGTCAACAAATGGAAATGAAGAAGAAAAATATGGTGGAAATTTTGAAAAAGCTCACTAAGAAGCTAAAAGCCATAATGGTGCTGAAGAACAACTGGGTTGAAGAAGAAAGTGCCAAGAGAGATGGGCTTTGTTGTGAACTGCTTGATTGTGTTGAATCACCTGTTCTTGACGGCTATCGAAATAAGTGTGAGTTCACAATTGCTGAAGGCCCTGATGGAGCTAAAACTGTTGGATTCCGCCTTGGCTCATATAAAGAGGGTTACAGTGGAGTAGTTGAGCCGTCTCAATGTATCCACATTTCGGAAAAGGCCAAAGTCATCGCTAAGGCATTTGAGAATTACATCAGGCAGTCTCCGTTGCCTGTGTATGATCTCTGCTTTCACACAGGCTATTGGCAGACGCTAACAGTTAGGACATCCATGTTTGGCCACACGATGGCAGTTCTGCAGTTCAGTCAGCAGAAAATGACCCAGGAGGAAATTGAAGCTGAGAAAAACCGTATCTGTGAGTATTTCAAAACTGGGGAAGGCAAAGACGTTCAGCTCACATCCCTTTATCTTCAAATAAACCCTACAAGGGCTGTTGGTGGTAATGCAGAAGCTCCTTTTGTACACATCATGGGTGAAGAGCACATTTATGAAGAGCTTTGTGGACTGAAGTTCAGAATCTCTGCAGATTCGTTCTTTCAAGTTAACACAAAGGCAACTGAAAAGCTGTTTGACTTGTTGAAAGAATGGTGTGGGGACAACCTGGATGAGACGGTGGTACTCGACATTTGCTGTGGCACTGGTGCACTTGGACTTTGCTTAGCTCAGAGTGTTAAACGTGTGATTGGCGTTGAAATCATCGAAAACGCTGTTAAGGATGCCAAGGCAAACGCAGAACTCAATGGCGTCACAAATGCTCAGTTTGTTTGTGGTAAGGCAGAGGACATTATCGTTGACGTGTTCAAAAACATGCCACGTAAGACAAAAATCATTGGCATCATGGACCCACCTCGTGCTGGACTGCACCAGTCAGTTCTTGCAGCTGTCAGGAAGAGCCGTCGAATGGATAAACTGATCTACGTGTCTTGCAACCCAAGTGCAGCTTTCGTTAACTTTCTTGATTTGTGCAGACCAACATCGAAGAGAATCAAAACAGCACCATTCAGGCTGGTGAAAGCCGTCCCAGTAGATCTGTTCCCGCACACCAAACACTGTGAACTGCTGCTGTTGTTTGAGAGGGACATGACGTCAGTTGACGCCGCCAAGTTTTACAAGTGGTAA

Transcript

rna-XM_073402434.1

accaatatggcggacgaaAGTTGCGACAGGGACGATTTTGCTCAGCAAGAAACATCTTTGGACAGCAACCAGGCTGTCTTTCCAGATGAAGAAATTAAGCAAGAAGTTAAGCAAGAAGTATCAACTCCTATTCCTGGCTTTCCACCGTTGTTTCAGTTCGCGAAGGTGCAAGCAGAAGCCTCTTCATGGACTTCTACTTCGTCGACAACAACAACTGCTACAAGTTGTGGAAGCTATGCAACGTTAGACACAGAGACTAAAGAGCAGCCAACAAGTTCAGAAACAGTTAATGCTGTTGAATCAAGCTCTATGGATGGATTGGGGTTGTCAAGCATTAGTGAAGCTTCTGATGTTGCTGCGAAAATGCAAGAAGAATCGTCTTTGGGCGACGACAAAGTTAACGAGGAGGGTGACAAAGATGATGGTAAAGATGGTGAGGAGGTGGCAAACGACGAACCGGATGAAGAAGAGATTGAATCTGATccttatttttacattaaacGGGATGAATTTACTTCAGAGATCTACAAAATTGAACTGCAAAATTTACCAAGGAAGTGTGGCTACAAGCAATTCAAGAAAATGATTGCCAACCGGCTCAACGTGAGACCAGTGAAGGTGAAATTGCCTCCAGGAGCAACCCATGCTTATGTGACTTTCAGGAATGAAGAAGAAAGACGGTTGGCTATCAGATCATTATCAGGACACAAGTGGAAAGGAAAAGTGCTTTCTGCCAAGACGGCTCAGCCTCTACCTGATCCACTTGCCGTTCAAAGAGCTGAAGGAATGGCAAGAAAAAGGATGATTCAAGATGCTGCTCGTTCAAACATTGATGCTAAGAGGATTAAAGTAGATGATAATGATGAGGGTGAAGAACTTGCTATTTCTGTCAGGTTGAACCATGTTGTCACTCCATTGTGGAACCAGCCTTACAGTCAACAAATGGAAatgaagaagaaaaatatggtggaaattttgaaaaagctcACTAAGAAGCTAAAAGCCATAATGGTGCTGAAGAACAACTGGGTTGAAGAAGAAAGTGCCAAGAGAGATGGGCTTTGTTGTGAACTGCTTGATTGTGTTGAATCACCTGTTCTTGACGGCTATCGAAATAAGTGTGAGTTCACAATTGCTGAAGGCCCTGATGGAGCTAAAACTGTTGGATTCCGCCTTGGCTCATATAAAGAGGGTTACAGTGGAGTAGTTGAGCCGTCTCAATGTATCCACATTTCGGAAAAGGCCAAAGTCATCGCTAAGGCATTTGAGAATTACATCAGGCAGTCTCCGTTGCCTGTGTATGATCTCTGCTTTCACACAGGCTATTGGCAGACGCTAACAGTTAGGACATCCATGTTTGGCCACACGATGGCAGTTCTGCAGTTCAGTCAGCAGAAAATGACCCAGGAGGAAATTGAAGCTGAGAAAAACCGTATCTGTGAGTATTTCAAAACTGGGGAAGGCAAAGACGTTCAGCTCACATCCCTTTATCTTCAAATAAACCCTACAAGGGCTGTTGGTGGTAATGCAGAAGCTCCTTTTGTACACATCATGGGTGAAGAGCACATTTATGAAGAGCTTTGTGGACTGAAGTTCAGAATCTCTGCAGATTCGTTCTTTCAAGTTAACACAAAGGCAACTGAAAAGCTGTTTGACTTGTTGAAAGAATGGTGTGGGGACAACCTGGATGAGACGGTGGTACTCGACATTTGCTGTGGCACTGGTGCACTTGGACTTTGCTTAGCTCAGagtgtTAAACGTGTGATTGGCGTTGAAATCATCGAAAACGCTGTTAAGGATGCCAAGGCAAACGCAGAACTCAATGGCGTCACAAATGCTCAGTTTGTTTGTGGTAAGGCAGAGGACATTATCGTTGACGTGTTCAAAAACATGCCACGTAAGACAAAAATCATTGGCATCATGGACCCACCTCGTGCTGGACTGCACCAGTCAGTTCTTGCAGCTGTCAGGAAGAGCCGTCGAATGGATAAACTGATCTACGTGTCTTGCAACCCAAGTGCAGCTTTCGTTAACTTTCTTGATTTGTGCAGACCAACATCGAAGAGAATCAAAACAGCACCATTCAGGCTGGTGAAAGCCGTCCCAGTAGATCTGTTCCCGCACACCAAACACTGTGAACTGCTGCTGTTGTTTGAGAGGGACATGACGTCAGTTGACGCCGCCAAGTTTTACAAGTGGTAAAATGAAAGCTCCAAACCAAGGCATTCTTAACCGGGTGAAGTTGATTTTTTATCTAGGTGATTTTCGGGCTAGCACATACCTGGAGAATTTCGTGATCAAAATTTTATTcgttaaaaatttttttcaagtattAATCTTTTCAGCATTGCTCTCACTGATGGTGTGCTCGCaagtaaaaatattctttaagtGTTTCTCGCGAATGTGATCTAGCAATCAAGACATAACGGCATTCTAAGCGCAGTTTAGTAACACGAATGTCTGTGAAATGGTGTGTACCCCTAGAGTACAGTTGATTTAACTTCGCCCTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958 all species →	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010280 all species →	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR034262 all species →	Domain	TRMT2A, RNA recognition motif	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR030390 all species →	Active_site	RNA methyltransferase TrmA, active site	Interproscan
IPR045850 all species →	Family	tRNA (uracil(54)-C(5))-methyltransferase, metazoa type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45904 all species →	TRNA (URACIL-5-)-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15332	TRMT2A; tRNA (uracil-5-)-methyltransferase	EC:2.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.