Gene detail

Detailed information of XP_073258702.1 in Porites lutea

Genomic Location: chr11:5570079...5582970
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073402601.1

ttttcaagatggcggcagCTAGTGTCGGGGTTTATGTAACTAGACCTTACTTCTTACCAAGTTCTTTCTgattttcacaaattttttgAGTTTTCAGTGGTTGTATACAGTTATAAGCACTTGGTTTTTATCGGAGTGGTGTCTAAAGGAAACTTTTTCCTTGGTTACATTGAAGCAGTCGTAAGAGTAACAAGCTTACATAACATCAGCAAAACATCTAAGTTCAACAAGGAAgaaggatattttttttaaatgagcCGTACAGTGCTACAAACAAGAACTATTATCCCTCTTTTGAGGACATCTCTTCTAAGTAAACTTTCAAGTGAATTGGTTGTATGTACTTCACGACCAATTTCAGCTTGCGCTGTATGCGGAAATGAACGCCCTCGAAGCAATCAAACTCAAAGAGAGAAGATTTTGGCGCTCAGTAAAACACAAATGGCGGGGTTCTCAACGAAGGAAAATCAATATCCGAATCTTAATTCAGCTATTTTGGATAACCCAGGGTTCAGGAAAGATGTTGTTAAATTCTGTACTCAGCTAAATGTAAATATCCAAGACATAAATCATCTGCTAGCTCCATTTACTCATGAGTCATACCTTCTGGCAAATGTCCACAAGCTGTCTGGACCTCATGAGAGTAATGAGAGGCTGGCATTTTTAGGTGCACAAGTTATGAGAAAGTGTGTAACAGAGCACCTCTACCACAATTTTCCTGAACTTTCAGCAAGAGAAATTTGGGATGTGCAGACAGGATTATTAGAAGATCATGTTCTCTCTAAAGCCCTTGAATGGAATATAAAAGCAATAACCCTTTACTCAAGACATCCCCAGGATCTAATGCTGCGTCAAGCTGTTCTTGCTCTTGTAGGGGCAGTTTATACTCGTGAGAGTCCTGAGAAGGCAGATGTATTTGTCAAGTTACATCTTATACCTGAGCTTACAAGAAATGAGATTGAAGAGGTAGTGAAGCTGCAACACCCAAAGTTTATCCTTCAGTCAATAGCAGAAAAAGTGGGTCACTTCCCTCTTAAAACAAGGCTTGATTACTCAAAAAAGAGTAAATCACATCTTCACTTAGATAATCCATTCAGCTATTGTGTCAGTGTTGtacgcggccaagaaaatgaggtcCTTGCCCAAGAGGTCTCTTACAGTTTAACATTGGCAGAGAAAAAGGCATGCCAGAAGGCCCTCATAGCACATTATGGTGAGGAATTCAATAGTTTTCACTTAGCAATGAATGATAAAGATGAATTTACAGTTGAGACAGATGTTGACCTTGGTTTGATAGCCTCTGAACAGAGAATAGTGGAACTCGACAAGGGACAAGAACAAAGCTTTGGTTTTCACATCAAGGGTGGTGAGAAACGGAAGAAGAGAACTGAACAATGGCTTGTGTTCCATTACACCACACCCATCTTTATATCACACATTGTACCTGGTGGTGTGGCAGACATGCATGGGGGATTGTCTGTTGGTGACAGGATTCTTGCTGTGAATGACAGGAGTATGGAAGGGCTTGATCATCAGCGAGCAGTTAATCTGTTAAAATCAGTCTCTGgCCGTGTAACCTTGACTGTCGCCCACTGTAAAGAAGCTTTAATTGCTGATAAGGTGGAGATGAAGTACAAGGAACTGAGGCGCAAAAAACGCATGGCAGAGCTGGCATCTGATATCTGGTCTGATTGGCACCAAGCCCAAGCAAACCGTCAGCCATCACAGTACAAAGATGTCCTCAATTATCATGATTTACCCAAGGAGGCTAAGAAACCATCATCTTAGCCATCCATGGATCCCTATCCGGCTATTTACTGTGTAAATCTGAAAGCTAACCCTTATACGTCCATTGAATTTCACTATTTAATTTGTACCTTGCAAAACTTCGTCTAATTCGCTACTTTAGAAACGAAAAGGAATCTGGGTCgggttaactttcgcaaagattCCTGGGTCTGTTACTAGGGCCaggggaaaaattggccaatagctgagcAGCGCATCCCAACTAACGATGCTAGAAACAATTTATTGCGGGACGCATTCCGGCTTCAGTTGTCTTCTCTTGTCGATAAAGTTACGAATTGTTTCCATGCTGTATGAATGATCAAATGATACCAGTCTGTTAACAGACTAACGTTTAGAACCTCTTAAAATGCCTTTATGTCTAGAAGGTTTAACAACGCCAGCTGTTAAAAATCTGATATCCATTTCCTAGTTAAGAACAGGTCAATCTCTGCTAGTTATCTGTCATTGAAAAACTCATCATTGGCCAAAACAAGTCATACCAAGCATGCTAACCTGGCCCAGCTTAACAAAACAAGAGTAGAAATGGTCGAAATTAAGGTCTACTAATTAAAGGTTATTTCTTGCGTTTTCACGAATTTCTTGAAAAGGGCAAGGCATTTATCAAGGgaattgcagaaaaaaaaaatcctgtttTCCAAAGTAGGAAACGTGGAGGCATTCTCACAGAATGATCAAATACGGTTTTTGGTTGCAAAGCATTTCGTGAGCAAGATCTGTTCGGTTCTACCAATATTATCCGTGAAATAAAAATGGATCATTCGACGATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR051109 all species →	Family	Membrane-associated multiprotein complex regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14063 all species →	PROTEIN LIN-7 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0007269 all species →	Biological Process	neurotransmitter secretion	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0045199 all species →	Biological Process	maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1903361 all species →	Biological Process	protein localization to basolateral plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073258702.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.