Gene detail

Detailed information of XP_073259177.1 in Porites lutea

Genomic Location: chr12:8279594...8287942
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140953664

ATGTTACAACACTGGAGAGCCAATGTAGATCTTCAAGCCATTGTTGACACTGACCAGTGCATCCGGTACATGGAAAAATACGCTACAAAAGGTGAACCTCGATCACAGTCCGCATCTGCAATACTCACTGCATGTGTTAATAGACTCGACAATACAGACATGGCTTCATCAGCACTGCGAAGAGCGATGACTCAGGTCGCTGGAGAACGTGACCTAGCATCTCAAGAAACTGCACATATGCTTCTTGGAAAACCATTGTATTCTTGCACCTATTCCTTTCTCTGTGTCTCATTGGATGGAAGTCGAAGAGCTCGTATTGGAGATGAAGATGATGAAAACCAAGGTGATCAAGCATTAGACCCATCAGTACTTGACCATTATGCTACTAGAGCTACCTGGCAAGAAAATAACCCACCCATTCTTAACTTTAATTTTCTACATTTTGCCTCTGCTTACTATGTCACTAAGGGAGAGCTCAAACAACGTAAACAGGAATGCTACCTTGCATTTCTTTCCTCTGAAAGTGCTGCGCATTACATTCCAATGTTACAGCAAGAGCTTGAACAAACACACCGTTATAATGGACATGACCACGAAGAGGACAACAGTGATGATGACGATGAGGAAGTACCACAACATGAGGGAGGACCAGAGGAGTGGATGCTGCTATGTCGCCTCAATCAACACTATGATGACACTCTCTCACAAGGAACCCAATCTCATGAAAATATGCAGTTTGACTGGACAGAAACTGCCAGAGCAATGCCTCCTGCCCTACTACGTGAATCTGCTAACTGGATTACAAAACGCAGAGACGAGGCTCTAGAGGACCCAATTAGACGACAGCAAGAAACTGTTGATCCAGCACGACTGAATAGACAACAGATGCTTGCTTACAATATCCTTGCTTCTCATCATGCAGCGCTAAACAGTGCAACTCCCCCAGAACCACTACAAGTCATTATCACAGGAACAGCAGGATCAGGTAAGTCCTATCTTATTAATGCCATAAAAGCCCTTCTAGGAGGCACATGTATACTTACAGGAACCACTGGTTTGGCAGGCTACAACATTGAGGGTTGTACCTTACACTCAGCTTTACAGCTGCCAGTTCGTAATAATAATAATAATGACTTGCAAGGAACAGCATTGCAACGTCTGCAACTTGGTTTCTCTGGAAAGCAGTACCTTATTACTGATGAAATGTCGATGCTTGGTCAGCGGACACTAGCTTGGGTCAATAAGCGTCTACGACAAGCCACAGGAAAACTTAATGAACCTCTTGGAGGGATTTCCGTGATGCTCCTTGGAGATTTTGCGCAGCTATTACCTGTTGGAGATAAGCCTATTTATGCTTCCCCATCCCAGTCCAGTTTTTTACTCACACAGCATGGACATTCCATTTATTGTCTATTTCAAACAGTGGTTATGCTATCAGAAAATATTAGACAGGCTGGAAACAATCCTGAGGCAGAAGAATTTCGCGCAATACTCCTTCGCTTACGAGATGGTCAGAGTACTCAAGATGACTGGACGACACTCTGTCAGAGGACACCACAGCATGCTAACATGAGTGACTTCACAGATGCACCGCGATTATATTTTGACAAACTCAGTGTGGAAAAGTACAACTTTGAGAAACTTAAGAACCTAGGATTGCAAATAGCTCGTATTTCTGCTATTCATTCAGGTAGAAATGCTAAGAATGCCAAATCCAATGATGCTGGTGGCCTCGATGCTGTAATTTTTCTTGCACGCGGTGCTGCTGTTATGCTTACAAGCAACCTGTGGCAGGAAGTGGGCCTGTGCAATGGTGCCACTGGTGTAGTGGAAGATCTACTCTTCCATCCTGATCGCTCTCCACCTTGCTTACCCATTGCAGCACTCAGTGGAATATTTCTCAGCACCATTGCAACTCTTAGCACTGTAATGGGTGTCCCAGTAAGACTGACCAATGTATCTGTTCCTAACGGTGGTCTCCAGTCACATGACATGAGAGTGCTTCAGCTTCTGCGCATGATCTGCAATGGAACACTGGCTGCAAACACAGGACTGTCCACCGTGACATACATCCCTGGAGAGTTGCTGAGTGGCACTTCTCAGCTGAAGCCGGGAGATTAG

Transcript

rna-XM_073403076.1

ATGTTACAACACTGGAGAGCCAATGTAGATCTTCAAGCCATTGTTGACACTGACCAGTGCATCCGGTACATGGAAAAATACGCTACAAAAGGTGAACCTCGATCACAGTCCGCATCTGCAATACTCACTGCATGTGTTAATAGACTCGACAATACAGACATGGCTTCATCAGCACTGCGAAGAGCGATGACTCAGGTCGCTGGAGAACGTGACCTAGCATCTCAAGAAACTGCACATATGCTTCTTGGAAAACCATTGTATTCTTGCACCTATTCCTTTCTCTGTGTCTCATTGGATGGAAGTCGAAGAGCTCGTATTGGagatgaagatgatgaaaaCCAAGGTGATCAAGCATTAGACCCATCAGTACTTGACCATTATGCTACTAGAGCTACCTGGCAAGAAAATAACCCACCCAttcttaactttaattttctaCATTTTGCCTCTGCTTACTATGTCACTAAGGGAGAGCTCAAACAACGTAAACAGGAATGCTACCTTGCATTTCTTTCCTCTGAAAGTGCTGCGCATTACATTCCAATGTTACAGCAAGAGCTTGAACAAACACACCGTTATAATGGACATGACCACGAAGAGGACAAcagtgatgatgacgatgaggaAGTACCACAACATGAGGGAGGACCAGAGGAGTGGATGCTGCTATGTCGCCTCAATCAACACTATGATGACACTCTCTCACAAGGAACCCAATCTCATGAAAATATGCAGTTTGACTGGACAGAAACTGCCAGAGCAATGCCTCCTGCCCTACTACGTGAATCTGCTAACTGGATTACAAAACGCAGAGACGAGGCTCTAGAGGACCCAATTAGACGACAGCAAGAAACTGTTGATCCAGCACGACTGAATAGACAACAGATGCTTGCTTACAATATCCTTGCTTCTCATCATGCAGCGCTAAACAGTGCAACTCCCCCAGAACCACTACAAGTCATTATCACAGGAACAGCAGGATCAGGTAAGTCCTATCTTATTAATGCCATAAAAGCCCTTCTAGGAGGCACATGTATACTTACAGGAACCACTGGTTTGGCAGGCTACAACATTGAGGGTTGTACCTTACACTCAGCTTTACAGCTGCCAGttcgtaataataataataatgacttgCAAGGAACAGCATTGCAACGTCTGCAACTTGGTTTCTCTGGAAAGCAGTACCTTATTACTGATGAAATGTCGATGCTTGGTCAGCGGACACTAGCTTGGGTCAATAAGCGTCTACGACAAGCCACAGGAAAACTTAATGAACCTCTTGGAGGGATTTCCGTGATGCTCCTTGGAGATTTTGCGCAGCTATTACCTGTTGGAGATAAGCCTATTTATGCTTCCCCATCCCAGTCCAGTTTTTTACTCACACAGCATGGACATTCCATTTATTGTCTATTTCAAACAGTGGTTATGCTATCAGAAAATATTAGACAGGCTGGAAACAATCCTGAGGCAGAAGAATTTCGCGCAATACTCCTTCGCTTACGAGATGGTCAGAGTACTCAAGATGACTGGACGACACTCTGTCAGAGGACACCACAGCATGCTAACATGAGTGACTTCACAGATGCACCGCGATTATATTTTGACAAACTCAGTGTGGAAAAGTACAACTTTGAGAAACTTAAGAACCTAGGATTGCAAATAGCTCGTATTTCTGCTATTCATTCAGGTAGAAATGCTAAGAATGCCAAATCCAATGATGCTGGTGGCCTCGATGCTGTAATTTTTCTTGCACGCGGTGCTGCTGTTATGCTTACAAGCAACCTGTGGCAGGAAGTGGGCCTGTGCAATGGTGCCACTGGTGTAGTGGAAGATCTACTCTTCCATCCTGATCGCTCTCCACCTTGCTTACCCATTGCAGCACTCAGTGGAATATTTCTCAGCACCATTGCAACTCTTAGCACTGTAATGGGTGTCCCAGTAAGACTGACCAATGTATCTGTTCCTAACGGTGGTCTCCAGTCACATGACATGAGAGTGCTTCAGCTTCTGCGCATGATCTGCAATGGAACACTGGCTGCAAACACAGGACTGTCCACCGTGACATACATCCCTGGAGAGTTGCTGAGTGGCACTTCTCAGCTGAAGCCGGGAGATTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan
PF21530 all species →	Pif1_2B_dom	DNA helicase Pif1, 2B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR049163 all species →	Domain	DNA helicase Pif1-like, 2B domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073259177.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.