Gene detail

Detailed information of XP_073259368.1 in Porites lutea

Genomic Location: chr12:22379127...22386835
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140953889

ATGAAGAAAACGAAAGATAATTTGATAACAAAACTCGCCTTGAGAGAAACAAGAGGGAATATGCAACCGCATTTGCGCGGTAATCGACAACGCTTCTTCAAGAAATATCCTCAGCGGTTTTGTATTCCACTGGCAAATATACTGGACTCAAATGGCGCTATAAAGAAAGGGCATGTTATTCTTGGATTTACCAAGAATGGCAGATACCTAGTATCCTATTCTTTGAAAATTGATAACGATGACAGTAGTCCTCTTCTATGTTACGTATATTCACTTCATTGGTGGGAGTTTAATCAGCACAAACCTTTAGTTGAGGTTTTTTCTGTGACGTTATTTGATAAAGAGGAAATACATCAAGACCTTCATTTAATAGTTGCTGAGAGCCAAGATGAATCAACATTTGTGGTCTATGGTCAAACGCACTCTGTTAAAGATGACTATGATCAAAGTCACCAGTGTTATGTTACAGTTTGTGCTGGTCCCTCACCACATCCATGTGTTGGCTGCAATTATGCATCGCTTGGCAGAGTAACTGACAAGTGTTTGAAACATTCATTTGTGGTTCATTTTAAATTTGATCTTATGGCACCTTTTCCTATGTTCAACCCTTCACTAAGTCTCAAGATGCAAGATACAGTTCTCTTCAACACTGGGGATTTTTTGATGGCATTAAAGGTCTCTGCAACATTTAACAAAAACAGCAGCCTCGTGACAGAAAGTGTTGATTTTTGTGGAGATCAGCAGAATGAATTGTTTTGCAAGGTGTGTGATAAGGCACCTGATAGTATTGCCATTTCAAATCAATACTCGGCAGTCACAGAAGTTGACAGATGTCATGCTGCAGACAAAGATAATGAGAATCAAGCATGTGGTGGGATAAGTGGAACACATCATTCTCAAACTCATCTTGGGGAAGATTCAAGTTCAGCTGACAGTGAAAAGACTGTGCAGGGCGACTCCAGCATTAACGAAATCCATGCTGGAAAGAAACAGCTTGGCCGGCAGAAGGTAGTCCTTGGTTTTGTAAGAGAACTATATGAAATCCATGGTGAGTGCGTTAATTCACATCAAGTCAATGATAGAGAGTATCTTTTGACTCCTCAAGAAACATTTGATGAAAAGGATACTAAAGTACATTCAGAAATTTGTTCAGATGAAGCAAATGGCTCATTAGATGGTCAAACAAACCAGTCTAGCAACAAAAGTGAGTCTAATCAACTGACAGAGAAATTTAGATCAGGTCAAACTTCTGAGCTGTCTTTTTGTAGTAAAGATGAGACTGAGGCAACAAAGACTGTATGTAGCATAGTCACTGAAGTGTCCTCAAGAAGTGCTGTACATGACAGCTTAAAAGATTCATCCCTTCCAGACACTGACAGTAAAAGCAATTACAATTTAGATGCAGATTATTCCGCAAAAATGGTTGATTCATGCTGTTGTGGCCGTAATGCAGTCGTACCGACAACAAACAACAATTTAACATTATCAGTACTCAAGGTATATGCAGACCCGGATAATGGTGATCTGTGTGAACTGCCAGATAGATCAGATGAGTTTGACATGTATGATGGGTCACTGGCAGTCTCAGTGAAAACATGTCATGGCAAAACACTGAAGCAAATTGGCAAGATCAACCAAAGCGGTCTCAAAATGGCACCAAGCAAGTTACAGTACCACTCAAAAGGACAAACACTTGTTGTGCATCAGATGACACTTGACCTGGAACAGTGTATCGGTGAGTTGATCCAAGCGCATGATAGACTCAGAGATTGCTATAAATCACTCAAAGACTATGATGTACAGATACTACATGTGTTACCAGACAGTCGCCGGGTTGTCATTATGGCAAGAATTCTGGTGTACACTCGTACGAGGGAGAAGTCTACATCATGCGGCTTGCCAGTCAGTCCAAGTCCCGTGTTGCAGTGTACAGGCTTCATATTTTCCTGGGATCTATGTACTGGTGGGTTGAGAATTCTCCAAGTTCTAGATGTTGAGGCCTACTCGGAACAGAAGAAATACGGCAAGTTTAACATGGCCGCCAAAGAAGCAAGGGAGCTACGGGCAAAAATTTTCATTCCTCAAAGCTTTTCCTCTTATGTGCAGGCGTTTTCCAATCATACTGTATTTACTGGAAAGTCGCTGAAGTATCTAAAGCATCCATTCCTTCCGCTGGTGTTGGTATTGTAG

Transcript

rna-XM_073403267.1

CATCAAAAAGTATGAAGAAAACGAAAGATAATTTGATAACAAAACTCGCCTTGAGAGAAACAAGAGGGAATATGCAACCGCATTTGCGCGGTAATCGACAACGCTTCTTCAAGAAATATCCTCAGCGGTTTTGTATTCCACTGGCAAATATACTGGACTCAAATGGCGCTATAAAGAAAGGGCATGTTATTCTTGGATTTACCAAGAATGGCAGATACCTAGTATCCTATTCTTTGAAAATTGATAACGATGACAGTAGTCCTCTTCTATGTTACGTATATTCACTTCATTGGTGGGAGTTTAATCAGCACAAACCTTTAGTTGAGGTTTTTTCTGTGACGTTATTTGATAAAGAGGAAATACATCAAGACCTTCATTTAATAGTTGCTGAGAGCCAAGATGAATCAACATTTGTGGTCTATGGTCAAACGCACTCTGTTAAAGATGACTATGATCAAAGTCACCAGTGTTATGTTACAGTTTGTGCTGGTCCCTCACCACATCCATGTGTTGGCTGCAATTATGCATCGCTTGGCAGAGTAACTGACAAGTGTTTGAAACATTCATTTGTGgttcattttaaatttgatcTTATGGCACCTTTTCCTATGTTCAACCCTTCACTAAGTCTCAAGATGCAAGATACAGTTCTCTTCAACACTGGGGATTTTTTGATGGCATTAAAGGTCTCTGCAACATTTAACAAAAACAGCAGCCTCGTGACAGAAAGTGTTGATTTTTGTGGAGATCAGCAGAATGAATTGTTTTGCAAGGTGTGTGATAAGGCACCTGATAGTATTGCCATTTCAAATCAATACTCGGCAGTCACAGAAGTTGACAGATGTCATGCTGCAGACAAAGATAATGAGAATCAAGCATGTGGTGGGATAAGTGGAACACATCATTCTCAAACTCATCTTGGGGAAGATTCAAGTTCAGCTGACAGTGAAAAGACTGTGCAGGGCGACTCCAGCATTAACGAAATCCATGCTGGAAAGAAACAGCTTGGCCGGCAGAAGGTAGTCCTTGGTTTTGTAAGAGAACTATATGAAATCCATGGTGAGTGCGTTAATTCACATCAAGTCAATGATAGAGAGTATCTTTTGACTCCTCAAGAAACATTTGATGAAAAGGATACTAAAGTACATTCAGAAATTTGTTCAGATGAAGCAAATGGCTCATTAGATGGTCAAACAAACCAGTCTAGCAACAAAAGTGAGTCTAATCAACTGACAGAGAAATTTAGATCAGGTCAAACTTCTGAGCTGTCTTTTTGTAGTAAAGATGAGACTGAGGCAACAAAGACTGTATGTAGCATAGTCACTGAAGTGTCCTCAAGAAGTGCTGTACATGACAGCTTAAAAGATTCATCCCTTCCAGACACTGACAGTAAAAGCAATTACAATTTAGATGCAGATTATTCCGCAAAAATGGTTGATTCATGCTGTTGTGGCCGTAATGCAGTCGTACCGACAACAAACAACAATTTAACATTATCAGTACTCAAGGTATATGCAGACCCGGATAATGGTGATCTGTGTGAACTGCCAGATAGATCAGATGAGTTTGACATGTATGATGGGTCACTGGCAGTCTCAGTGAAAACATGTCATGGCAAAACACTGAAGCAAATTGGCAAGATCAACCAAAGCGGTCTCAAAATGGCACCAAGCAAGTTACAGTAccactcaaaaGGACAAACACTTGTTGTGCATCAGATGACACTTGACCTGGAACAGTGTATCGGTGAGTTGATCCAAGCGCATGATAGACTCAGAGATTGCTATAAATCACTCAAAGACTATGATGTACAGATACTACATGTGTTACCAGACAGTCGCCGGGTTGTCATTATGGCAAGAATTCTGGTGTACACTCGTACGAGGGAGAAGTCTACATCATGCGGCTTGCCAGTCAGTCCAAGTCCCGTGTTGCAGTGTACAGGCTTCATATTTTCCTGGGATCTATGTACTGGTGGGTTGAGAATTCTCCAAGTTCTAGATGTTGAGGCCTACTCGGAACAGAAGAAATACGGCAAGTTTAACATGGCCGCCAAAGAAGCAAGGGAGCTACGGGCAAAAATTTTCATTCCTCAAAGCTTTTCCTCTTATGTGCAGGCGTTTTCCAATCATACTGTATTTACTGGAAAGTCGCTGAAGTATCTAAAGCATCCATTCCTTCCGCTGGTGTTGGTATTGTAGTTTTCTTCATAGTAGCTGTTGTAAGAAAGAACGAACGAGACTTATCCTGTTAACTTACTCTTTGTGAAGTGATTGAATTGTATTTTTGATAATTGGATTGCTCGTGACACTGATTAAGTTGGGATCGAACGGGTTTCATAAACTACTCATAACAACCTTCATTTGTGTACAGGAATCAGTTAATTCAGCCTACGCTCGTAAAAGAATTAGTTTATTCGCCTAGTTTCaacttttgctttgtttgttaaGGAGCCCGCAGTGGCAAGCGTACTAAAACTAACAGTTTTAAAACTAAACGGTTCAAATTCCAAAGCACCAAAAAAGCAGGCGAGTTAACCACACCCTCTAAGACCTTGGCGCGGTGAGCGAGGAAGAGAGGACCTAAAACGACAAAAAATGGCCAAACAAAGTTGTTTGATTGACCAAAAAAGGCGAGTCGACACTTTAGAGAATTCAACTgaccgtgtttttttttttttttttttttggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14939 all species →	DCAF15_WD40	DDB1-and CUL4-substrate receptor 15, WD repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047319 all species →	Domain	DDB1- and CUL4-associated factor 15, C-terminal domain	Interproscan
IPR032734 all species →	Domain	DDB1- and CUL4-associated factor 15, WD40 repeat-containing domain	Interproscan
IPR038914 all species →	Family	DDB1- and CUL4-associated factor 15	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28541 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11791	DCAF15; DDB1- and CUL4-associated factor 15	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.