Genomic Location: chr12:496243...503067
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140954015 |
| Transcript |
| rna-XM_073403404.1 |
| Protein |
| XP_073259505.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004017 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10637 all species → | Ofd1_CTDD | Oxoglutarate and iron-dependent oxygenase degradation C-term | Domain | Interproscan |
| PF13661 all species → | 2OG-FeII_Oxy_4 | 2OG-Fe(II) oxygenase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019601 all species → | Domain | Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | Interproscan |
| IPR005123 all species → | Domain | Oxoglutarate/iron-dependent dioxygenase | Interproscan |
| IPR051842 all species → | Family | Ribosomal subunit uS12 prolyl hydroxylase | Interproscan |
| IPR006620 all species → | Domain | Prolyl 4-hydroxylase, alpha subunit | Interproscan |
| IPR039558 all species → | Domain | Prolyl 3,4-dihydroxylase TPA1/OFD1, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12117 all species → | HISTONE ACETYLTRANSFERASE COMPLEX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0016706 all species → | Molecular Function | 2-oxoglutarate-dependent dioxygenase activity | Interproscan |
| GO:0031418 all species → | Molecular Function | L-ascorbic acid binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006449 all species → | Biological Process | regulation of translational termination | Interproscan |
| GO:0019511 all species → | Biological Process | peptidyl-proline hydroxylation | Interproscan |
| GO:0031543 all species → | Molecular Function | peptidyl-proline dioxygenase activity | Interproscan |
| GO:0016705 all species → | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24029 | OGFOD1, TPA1; prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase | EC:1.14.11.- | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
