Gene detail

Detailed information of XP_073259559.1 in Porites lutea

Genomic Location: chr12:1426223...1437279
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073403458.1

ACAGCGATCGTGTGTTCTTTCTTTGCCATGACTTTAACAAAATGCATCTTTGCTGGTGTCTTGAGAACGAAACCGCTCCTGAGAAATCATCACCAGGTTTTGcCATCTATACTCCATTGCAAGTTCTCAACAAGTTCCTCTAGATTGCTTAAGCTTTACAACAATGGAGAAGAAGCTGTAAAGGATATTCCTGATGGAGCAAAATTATTGGTAGGAGgATTTGGTCTCTGTGGAATACCTGAGAACTTGATTGCTGGCCTTCTTAAAACTGGAGTTAAGAACTTAACGTTCGTCAGCAACAATGCAGGAGTTGACGATTTTGGTCTTGGCTTGCTTCTTAAAACTCAACAGATTAAACGGATGATTTCATCATATGTTGGTGAGAATGCAGAGTTTGAACGTCAGTACCTCTCTGGAGAATTAGAAGTAGAGCTTACTCCTCAGGGCACCCTTGCTGAGAGGATCAGGGCAGGGGGTGCAGGAATCCCAGCTTTTTTCACTCCCACAGGATATGGGACCCTGGTACATCATGGTGGCTCTCCTATCAAATACAACAAAGATGGCACTATACAGATTCCTAGTCAACCGCGAGAGTCAAGGGAATTCAATGGTAAGAATTATGTCATGGAAGAGGCCATTACTGGAGACTTTGCTCTTATTAAAGCAAAGAGAGCTGACAAGGCAGGAAACCTTATCTTCAGTAAAACAACAAGGAATTTCAATGCACCAATGGGCAAAGCAGCCAAATTCACAATCGCTGAGGTTGAGGAAATTGTAGAAATTGGGGACCTATCAGCTGAAGACATTCACCTTCCTGGTATTTACGTAAAAGGATTATTAGAAGGCTCAAACTATGAAAAGAGAATTGAGAGGTTGACCTTAACTTACGACAATGTGAACAATGGAAAACCCAAATCAAATGGTGATGAGATAAGAGAAAGAATCATCAAAAGGGCAGCATTAGAGTTTAAAGATGGAATGTATGCAAACCTGGGTATTGGCATGCCCATGCTAGCCAGTAATTACATTCCTGAAGGGATGACTTTAGTATTGCAAAGTGAAAACGGAGTCCTTGGCCTGGGTCCTTTTCCGAGGCGAGGAGAAGAAGATCCAGACCTTATAAATGCTGGCAAAGAGACAGTGACTGTCCTACCCGGCAGCTCATATTTTTCAAGTGACGAATCTTTTGCCATGATCAGAGGCGGCCACATAGATATAACAATTCTTGGGGCCATGCAGGTGTCACAGTTTGGAGACATTGCTAACTGGATGATTCCAGGTAAGATGGTGAAGGGAATGGGCGGAGCAATGGACCTGGTGTCTAGTGACTCCAAAGTCATTGTCACGATGGAACATTTAGCAAAGGGAGACAAACACAAGATCTTAGAAAACTGCACCCTACCCTTGACAGGAACGAACTGTGTAGATATGATTATCACAGAAAAGTGTGTGTTTGAAGTTAGCAAAGAAAATGGTCTGATTCTCACTGAGTTATGGCCAGGAGTTTCTATTCAAGATATACAGATCTCCACTGGCTGCTCTTTTGAAGTTTCTCCAGATTTGAAAGAGATGGAGCAagtttcttaaaagagagagaaggagagagagaaaaacgaATTGTATCATAGTATTTATTCTGAATTAATTCCATTTGAAAGGACAGTGGTATGGAATACTATCAGACACACACGGAACAGGAAATTCCTTCCAAGTTTAAGTCGAGAGGAGAGAATTACGTTTTCAATACGACGCGAAGAGAACTTAAAATGGGTGTATTTAATGTAGTGCAACATGCTCCGTGTCGAGTGCGGGAAAACGTACAAACATTGTAAAGCGCGGGAAAATACTATCCTGTGTATCACGTGACGACCATTAGGTTTTTTTATTGGTTGGTTTACCTAGAGATAGTTATTTTTAAGGCCGATATGATAACTGTTTGGTGCGGAATATATTTTAATGAAAAAGGCTTTGGAGTGGACAAAACTGAATAAGGTATTCTATAGTTGCCGCATGTGTGTATAGATAGGTTGGGTAAGGGTATTTCTTCCTTTGCTTCTGTAGTAAAAGAAACGAAATGGAATGTGTTTCTCTTACGTGACATGGCAAATATATTTGACTATTTGTATACCAGTGAGTTCTCTTTTTATCCGAAAATATAGAATTGCTGCGCATGCGCACACGAGAGAAAACACGTCGGCAAGGGT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002892 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01144 all species →	CoA_trans	Coenzyme A transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004165 all species →	Family	Coenzyme A transferase family I	Interproscan
IPR012791 all species →	Domain	3-oxoacid CoA-transferase, subunit B	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR014388 all species →	Family	3-oxoacid CoA-transferase	Interproscan
IPR004164 all species →	Active_site	Coenzyme A transferase active site	Interproscan
IPR004163 all species →	Binding_site	Coenzyme A transferase binding site	Interproscan
IPR012792 all species →	Domain	3-oxoacid CoA-transferase, subunit A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13707 all species →	KETOACID-COENZYME A TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008410 all species →	Molecular Function	CoA-transferase activity	Interproscan
GO:0046952 all species →	Biological Process	ketone body catabolic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008260 all species →	Molecular Function	succinyl-CoA:3-oxo-acid CoA-transferase activity	Interproscan
GO:0046950 all species →	Biological Process	obsolete cellular ketone body metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01027	OXCT; 3-oxoacid CoA-transferase	EC:2.8.3.5	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.