Detailed information of XP_074606103.1 in Acropora palmata

Genomic Location: NC_133892.1:3788972...3822989
NR annotation: XP_015774550.1, PREDICTED: myosin heavy chain, striated muscle-like [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P24733Myosin heavy chain, striated muscle OS=Argopecten irradians OX=31199 PE=1 SV=1
F1PT61Myosin-16 OS=Canis lupus familiaris OX=9615 GN=MYH16 PE=3 SV=2
P49824Myosin-7 OS=Canis lupus familiaris OX=9615 GN=MYH7 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001298 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02736
all species →
Myosin_NMyosin N-terminal SH3-like domainDomainInterproscan
PF00063
all species →
Myosin_headMyosin head (motor domain)DomainInterproscan
PF01576
all species →
Myosin_tail_1Myosin tailCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001609
all species →
DomainMyosin head, motor domainInterproscan
IPR008989
all species →
Homologous_superfamilyMyosin S1 fragment, N-terminalInterproscan
IPR004009
all species →
DomainMyosin, N-terminal, SH3-likeInterproscan
IPR000048
all species →
Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR014751
all species →
Homologous_superfamilyDNA repair protein XRCC4-like, C-terminalInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR002928
all species →
DomainMyosin tailInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45615
all species →
MYOSIN HEAVY CHAIN, NON-MUSCLEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003774
all species →
Molecular Functioncytoskeletal motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016459
all species →
Cellular Componentmyosin complexInterproscan
GO:0051015
all species →
Molecular Functionactin filament bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000146
all species →
Molecular Functionmicrofilament motor activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0016460
all species →
Cellular Componentmyosin II complexInterproscan
GO:0032982
all species →
Cellular Componentmyosin filamentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17751MYH6_7; myosin heavy chain 6/7-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606103.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP