Detailed information of XP_074606133.1 in Acropora palmata

Genomic Location: NC_133882.1:4311934...4356904
NR annotation: XP_029193196.2, LOW QUALITY PROTEIN: fibrillin-2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q61555Fibrillin-2 OS=Mus musculus OX=10090 GN=Fbn2 PE=1 SV=2
P35556Fibrillin-2 OS=Homo sapiens OX=9606 GN=FBN2 PE=1 SV=3
Q75N90Fibrillin-3 OS=Homo sapiens OX=9606 GN=FBN3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003150 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12661
all species →
hEGFHuman growth factor-like EGFDomainInterproscan
PF07645
all species →
EGF_CACalcium-binding EGF domainDomainInterproscan
PF00683
all species →
TBTB domainFamilyInterproscan
PF12662
all species →
cEGFComplement Clr-like EGF-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR036773
all species →
Homologous_superfamilyTGF-beta binding (TB) domain superfamilyInterproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR017878
all species →
DomainTB domainInterproscan
IPR013032
all species →
Conserved_siteEGF-like, conserved siteInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR052080
all species →
Familyvon Willebrand factor C/EGF & FibrillinInterproscan
IPR049883
all species →
DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR026823
all species →
DomainComplement Clr-like EGF domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47333
all species →
VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23342FBN2_3; fibrillin 2/3-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606133.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
68TPM > 0
2Conditions
21.5Max TPM
4.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 37 3.78 9.24
all_coral_tissue · baseline 38 31 5.26 21.52

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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