Gene detail

Detailed information of XP_074606183.1 in Acropora palmata

Genomic Location: NC_133893.1:17859551...17863199
NR annotation: CAH3025761.1, unnamed protein product [Porites evermanni]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606183.1

ATGAATGAAGTCCCGGCGAAGTCTACTCCTAAAAAGATTTATGTTCGTAGTTCAGTTTGTCGGCTTTGTGGTGGTGCCAATGAAAGTCGTCACATGCTTCGGGTTTTGAGCAAAACTGGTCTTGAGAAGAACCTTCCTTCGAAGGTTCATTATGCCTGTGGAATTACGATAAACGACAGTGATTGCCTTACAAAGCTTATTTGTAGAAAATGTGAAGCATTCATCCACAAGGTATGTGACTTTAAGCAACAGTGTCAAAATATGCAAAGTAAACTTGAGCTTGAACAATACTGTTCGGTGAAGCGTTGCATGGAGTTGTCGCCATCTTGTAAACAGCCTGCGAAACGTTCTGCTGGCAAAAGTAGAGGAGAGGCTTCAGCAAAACAACTTCTGTTCGGAGAAACATCGACCGAGGTCAGCAAGTCTGGTCAGCAAGAGTTCGTGGAAAAGGCTGACCCTTCTTCAATAGTCAACAGTACCAACGAATTATCAACACCATTGCGTGGTTCCCAACATCAGGACGATGATGAAAACAACCTTGGAGCTATTATAACTGGAGCATTGAATTCAAAGCCTGCTAATGCTATGGCAGAAATCATTAGGACACATTGTCCAAGTGTGTTTTTAGCGCTGAAATCGGCCATTGCCGCAGAGGTCAGCACAGCTTGTCAGAAGCTTTGCAGACGTTCACAAGGCTCTGTTTTGTATGGAAACAGCTACGAGAGTCTGAAGGAATTTTCATTTTATAGTATTTGGAATGAAATGGAAACAAATATTCCTTTCATGATCCAGATAATGAGTGCTGTTTCTGCGAAAAACTCTGCAAACATTACTGTTGATTTACGCGTGAAATATGGTTTCATTTACTCAATCCTGATGAGCGAACGATGGCACGAACTTAGCGCCCTTAAGCGTGTCAATACAGTTTTGGTTCTAGAGGGTGGATGCACAAAGCAGCTTCAAGAGCGACTAAACAAACTTGGTGTTTGCCTCTCACATGGAAGGCGGGACACCCTGTTGAAACTTTTGGGAGGACACTTTGCTGATAAAGTGGTTGAAAGAGTGAAGTCTGGTAGAGTTTTCCGGGGCACTGGTGATAACTGGGACTTAAAAGTGTTAAAAGGACATATGAGAAAGGACATTCAGAATGAAGATCTTCATTTATTTGCATCAAACCTCATTGAAAACAGGGTCAATTTTTCACATCTTCCAAATGTTCACCCCAAGGGGGTTATTGCAAATTTCCCTCGCTACCAGTTTTTGTTAAATGTCAGAGAGTGGAAAGTTTACCTGAGCAGTGCAAAGATAATTGTGGGAAGAATAATTCTTGAATTTTTTCCAAAATTCAAGTGGTTGAAGTCAGTTATCCCCAGGCACATCCCTCATGTTTACAGTACTGAAATGGCCCAGAAATCCACCATTGTGAACTTACCACTGCTCAATGCTAATGAAGCTAAATATGAGGATTGTGTCAGTATTTTGAGAGCATATGAGAGGTGGATTGCTGAAATTTATCACAAGGCAGGGATACTCAAGGAAGTGCCACATACTGACAACCCTGAAGTGCCAGGGGCACCAGCAGCACCTGGACAGCCCAATGCTCATAGGAAGGACACTGCTGATGATCCCATGAGGGAAATGAAGATTGTCTTTGCTGGTGACCAATTGACACGGGTGCGATTTGCTGGAGCAAAGGATTTGCTCTCTGGTTCCCACACTCCTTCAGACCGTTTTGAGCACTGCTCCCCATTCAAACCAGTCATGTGGCACACCAAAGCATCCTTGTTACAATATTCATATTCATTCCTGCACAAAGCTGAATCAGTCAGCCAAGTTGGAACTCTAAAGTATTTCAGAGAAAAATTCAATCGCCGAAATGCCACTCCATCAAAAGTACTTGATTGCTATGAAGGTAGTGAAGAATTGTTCCTGAGTGTGGGGAGGGCATACATTGTTACTGCTGCACTCTCCTTTTTTGGAATGGCCAGCACTGAGGAGATGCCCACCAAAAACACCTTTGCCCCACATATTTCTGCTCAATCAGAGGAAAACAAGAAAACTTATTTTGAAGAAGTTTTTGGAAAATTCATTGATGTTTATCTCCTGCAAAAGACTGCTATCACAGATGGGGAAGATTATGTAAAAAATTATGCCCTGTGTTTCATCTTTCTTACCATCCTCATTTTGCAACTGAAAGACACTGCACCAGAAGCAGATGGAGAAAGAAATGTTATCAATCAGAAATTACTTCTTTCTGTCTTCAAATCTATGGGAGCATACAGCAAATATGCCTTAGAAATGTTTATCAGTATTGCACAGATGGAATGCATGCTAACTCCACGCCTTGCTGAAGAAGTTAAATGGGGTTTCTTTGTCAACTGGAGGGGTGGTCCTGGCAACAACATGGAAGATGACTTGGCACAAGAAATCTCCAATAGGTTAAGCAAGTCTATTGTCCAGAGGATGGGGCCAAACAAAACTCTCAAATCTATTAGTAAAGTTTGTAAGGCAGCAAATGGAATCAAAGAAGTTAAGGAACAATTTGACACTTCTGCTGGTATTCGTCACACTTCAGTCCAACACACGACACAAGATTCATTTGCAGACGAGAAGGCAATGATTGCAGACCTGGTACAGTTAGATCCTTTTAGAATCATGCCTGGAAGATATCACGAAAGCTTTCCTGAAATCAAGAGCTGTCCCCTGAGATACTTAAATATTGTTGAATTTCATCAATGGCTTGACAAACACAAATGGGAACTGTCTAATATAAACTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000158 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20231 all species →	DUF6589	Family of unknown function (DUF6589)	Family	Interproscan
PF07776 all species →	zf-AD	Zinc-finger associated domain (zf-AD)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012934 all species →	Domain	Zinc finger, AD-type	Interproscan
IPR046496 all species →	Domain	Domain of unknown function DUF6589	Interproscan

PANTHER

No PANTHER signature was detected for XP_074606183.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074606183.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606183.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

36TPM > 0

2Conditions

4.7Max TPM

0.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	16	0.52	2.83
all_coral_tissue · baseline	38	20	1.32	4.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.83
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.44
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.35
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.20
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.83
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.75
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.73
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.69
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.43
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.23
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.10
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.06
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.95
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.80
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.24
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.19
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.74
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.48
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.85
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.36
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.17
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.97
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.92
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.90
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.52
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.46
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.42
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.10
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.99
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.92
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.87
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.77
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.74
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.68
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.01
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.37
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.