Gene detail

Detailed information of XP_074606203.1 in Acropora palmata

Genomic Location: NC_133882.1:21265440...21273445
NR annotation: XP_015747551.1, PREDICTED: gamma-butyrobetaine dioxygenase-like [Acropora digitifera]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZU7	Gamma-butyrobetaine dioxygenase OS=Rattus norvegicus OX=10116 GN=Bbox1 PE=1 SV=1
Q5R5D8	Gamma-butyrobetaine dioxygenase OS=Pongo abelii OX=9601 GN=BBOX1 PE=2 SV=1
Q924Y0	Gamma-butyrobetaine dioxygenase OS=Mus musculus OX=10090 GN=Bbox1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000823 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06155 all species →	GBBH-like_N	Gamma-butyrobetaine hydroxylase-like, N-terminal	Domain	Interproscan
PF02668 all species →	TauD	Taurine catabolism dioxygenase TauD, TfdA family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042098 all species →	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR010376 all species →	Domain	Gamma-butyrobetaine hydroxylase-like, N-terminal	Interproscan
IPR003819 all species →	Domain	TauD/TfdA-like domain	Interproscan
IPR050411 all species →	Family	Alpha-ketoglutarate-dependent hydroxylases	Interproscan
IPR038492 all species →	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10696 all species →	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045329 all species →	Biological Process	carnitine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00471	BBOX1; gamma-butyrobetaine dioxygenase	EC:1.14.11.1	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.