Detailed information of XP_074606322.1 in Acropora palmata

Genomic Location: NC_133893.1:15453160...15460114
NR annotation: XP_029212463.2, growth hormone-inducible transmembrane protein-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H3K2Growth hormone-inducible transmembrane protein OS=Homo sapiens OX=9606 GN=GHITM PE=1 SV=2
Q5XIA8Growth hormone-inducible transmembrane protein OS=Rattus norvegicus OX=10116 GN=Ghitm PE=2 SV=1
Q91VC9Growth hormone-inducible transmembrane protein OS=Mus musculus OX=10090 GN=Ghitm PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006906 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01027
all species →		Bax1-IInhibitor of apoptosis-promoting Bax1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006214
all species →		FamilyBax inhibitor 1-relatedInterproscan
IPR035871
all species →		DomainGrowth hormone-inducible transmembrane proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23291
all species →		BAX INHIBITOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0031305
all species →		Cellular Componentobsolete integral component of mitochondrial inner membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21890GHITM, DERP2, TMBIM5; growth hormone-inducible transmembrane protein-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606322.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
79TPM > 0
2Conditions
375.7Max TPM
129.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 43 111.44 244.43
all_coral_tissue · baseline 38 36 152.17 375.68

Per sample · hover a bar for the full sample record

Show the sample table (84 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR8800075 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 244.43
SRR8800066 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 228.18
SRR8800105 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 213.61
SRR8800097 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 200.33
SRR8800051 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 191.86
SRR8800100 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 178.87
SRR8800099 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 177.76
SRR8800080 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 174.96
SRR8800045 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 169.27
SRR8800053 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 166.73
SRR8800038 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 163.08
SRR8800077 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 154.71
SRR8800068 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 150.09
SRR8800056 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 145.14
SRR8800083 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 144.57
SRR8800071 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 142.84
SRR8800093 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 139.78
SRR8800079 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 136.79
SRR8800028 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 129.52
SRR8800044 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 113.10
SRR8800040 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 107.72
SRR8800036 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 102.46
SRR8800092 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 99.02
SRR8800107 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 98.85
SRR8800027 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 96.82
SRR8800039 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 94.42
SRR8800047 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 90.93
SRR8800073 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 88.73
SRR8800034 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 88.61
SRR8800033 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 87.64
SRR8800062 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 78.05
SRR8800065 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 76.82
SRR8800091 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 76.38
SRR8800088 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 72.16
SRR8800089 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 65.23
SRR8800026 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 65.11
SRR8800060 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 61.31
SRR8800063 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 60.65
SRR8800061 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 60.50
SRR8800087 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 53.08
SRR8800095 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 48.77
SRR8800058 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 48.55
SRR8800029 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 38.74
SRR8800042 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800086 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800094 all_coral_tissue · exposed all_coral_tissue not recorded exposed SRP189781 0.00
SRR8800052 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 375.68
SRR8800049 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 273.75
SRR8800108 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 269.81
SRR8800098 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 232.36
SRR8800069 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 229.93
SRR8800101 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 224.15
SRR8800109 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 201.55
SRR8800076 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 197.71
SRR8800050 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 196.94
SRR8800057 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 191.53
SRR8800106 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 190.04
SRR8800048 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 185.78
SRR8800081 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 181.69
SRR8800067 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 179.30
SRR8800078 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 178.08
SRR8800104 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 175.51
SRR8800096 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 175.20
SRR8800072 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 172.95
SRR8800035 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 171.74
SRR8800074 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 169.82
SRR8800037 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 165.49
SRR8800082 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 159.64
SRR8800043 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 156.89
SRR8800032 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 156.32
SRR8800041 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 150.01
SRR8800102 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 134.40
SRR8800103 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 105.36
SRR8800055 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 85.86
SRR8800031 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 84.30
SRR8800059 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 82.88
SRR8800084 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 74.26
SRR8800070 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 71.91
SRR8800090 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 49.08
SRR8800030 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 49.00
SRR8800064 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 44.63
SRR8800085 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 39.07
SRR8800046 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00
SRR8800054 all_coral_tissue · baseline all_coral_tissue not recorded baseline SRP189781 0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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