Gene detail

Detailed information of XP_074606378.1 in Acropora palmata

Genomic Location: NC_133893.1:20999326...21005452
NR annotation: XP_029207181.2, atrial natriuretic peptide-converting enzyme-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606378.1

ATGTTGATTACTGGAGTGGCCGTTTTAACGCAGAAAAAAGTCACAGACTTAAAAGATAGTGATTCAAAGACAGAGGAAAAGCCTGGCCCGACTTTCAATCTGGTAAAACGAGAAATCAACCTCGGGCTGAGGAGTAAAGAAAAGAGAAAGTTATCTCGACAGGAAGGCAAATGTGGGACAATATCAATTCCATTCTGCCAAAATATGTCCTATACCACGGCGCAGTTTCCAAACCATCTGAACCAGAATCAAGAAGATGCGAAGGCCTGGATAGACGCTAATGATTTAACAAAGCTCGTACAGAGCGGTTGCTCTCTATATATAGGACCCTTACTATGCTCCTTTTTAGCACCGCCCTGTAATGGACCAGGGAGGCTTGTAAAACCTTGCAAGCAGCTCTGCAAACGTGCAACCAAGGCATGCAAAGCTGTACTAAGACGGTTAAGAATCAACTTACATCCAGTCATGGCTTGCCGGCAACTGCCAAAAGATAGAACCCAAAAGTGCTTTGATGGATCATGGAAAGGAGACACGTCAGATTGTCAGCAAGTGCCGTTGAAGCAGTGTGCTAAGTACATCAAGAGAACATCTTCATGGCAAGCACAATTTCCTAATTACTTTGGCCACACGAAGGAGGAAGCCATAGCGAACCTAAAGCTATTTGATCCAATATGGCCGTACGCTGAGTCGGAACAGTCGGATTGCGCATCTACCTTAGCACATTTCCTTTGTAACATGTACGCTCCCCAATGTGCTAAGTCCAACTCTCGCATACCACCATGCAAAGAACTGTGTTTGAGCGCCAGATCAAAGTGCAGATCCTCTTTTAAACAAGTCAGGAAAGAAAGTGGTTTTACATGGCCCAAAGATATTGCGTGCAAGAACTTTCCACCGAGTGGTACGGCTCCTTGCTACATGACAACAACCCCAACAACATCGACAGGACAAGAAGTTGCACCAGTTACCAATGCCGCACCTTCATCTGGGAAATGTCAAAGGATTACCATTCCACTCTGTAAAACGGACCTTCCATACAAGACGGCACTTTTTCCAAATCTTTTCAATCAATCGAGACAAAGAGATGCTGCCATAGAAGTGAATCAATTCTCTCCACTTGTAATGGCTAACTGTGCCTCTGACTTGCCCCTTTTTCTTTGCTCCCTTTACGCGCCACCTTGTATGCGTCACAAAGAAAAAGTTCCTCCTTGCAGAAGCCTTTGCTCCCGAGTAAGGATTGGCTGTGAATCTCTGATGAACCGATTTGGTTTTAGTTGGCCCAAGATGATGGCATGCGAACGGTTCCCCGAAGCTTCTCCAACCACGCTTTGCTTGGACAAGCCCAACATGAAAACTCGTCAACCGTCGCTAACAGCTACAATTAGAAAGGAAGAGAGATGCGAGGCCATGACTATCCCACTCTGCCGCTCAAACGATGTTCTCTTCAAATACAACATGACACGGATTCCCAATTTCTTCAAACATTTTTCACAAAGGGAGGCAGCCCAACAAGTATCTCAGTTCCTTCCACTTGTGAAAGTCGATTGTTCACCAGATTTGTCCCTGTTTCTATGTTCTCTTTACTCGCCTCCTTGCATTGGACCACAGAAACCTTGTCGAGAGCTTTGCAACCGTGTAAAGACTGGCTGCGCTAGTGTTTTGAAGGAATTCGGTGTTCCCTGGCCCGAGGTCTTGGCATGTGAAAAGTTCCCTCTGAGCAGTGGTGACGAGCTTTGCTTTCAGCCGACGAAAGTCTCTGCAACTACAGCTCAAACACCGGCAACCACAACTCAAATACTTACTCTCACAGATAAATGCGAGGACCTGACCATTTCACATTGCCATGTTTTGCCCTATAACAAGACATTATTTCCAAACCACTTGAAACATCATTCACAAGAAGAAGCAGAACTTGAGGTTAACTCATTCGCTCCACTTGTGAACGTTAATTGTTCACAGGAATTTCAATCATTTGTGTGTTTTCTATACGCCCCACCCTGCGATGGCCCACGCTTACCATGCAAGGAGCTTTGTTACCGAGTTAGAGAGGCCTGCCTTTCTCTTATGCAAGGCTTTGGTTTCGGATGGCCAGATGAGATTGACTGCGATAGATTCCCTTCATCTGGGAACGGAACTAAATGCATGGATACACGTGCTGTTAGTCAGTCCACAACTGTAGCCCCAACTATGACTGATGAACAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I9M5	Frizzled-1 OS=Xenopus laevis OX=8355 GN=fzd1 PE=1 SV=1
Q8BKG4	Frizzled-10 OS=Mus musculus OX=10090 GN=Fzd10 PE=1 SV=1
P18537	Frizzled OS=Drosophila melanogaster OX=7227 GN=fz PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074606378.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606378.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

75TPM > 0

2Conditions

120.6Max TPM

40.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	40	32.73	107.25
all_coral_tissue · baseline	38	35	49.48	120.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	107.25
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.32
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.66
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	66.64
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	64.65
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.61
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.67
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.61
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.34
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.92
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.43
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.82
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.72
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.60
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.52
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.73
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.53
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.71
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.77
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.30
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.22
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.97
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.88
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.76
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.20
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.98
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.82
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.71
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.21
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.54
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.75
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.17
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.87
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.17
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.16
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.07
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.67
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.42
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.90
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.48
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	120.62
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	117.37
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.36
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.79
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	82.74
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	78.04
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.59
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.75
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.61
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.41
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.01
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.71
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	63.39
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.58
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	60.13
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.78
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.21
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.55
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.38
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.75
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.61
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.01
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.59
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.09
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.35
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.72
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.42
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.40
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.37
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.10
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.16
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.11
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.29
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.61
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.48
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.