Gene detail

Detailed information of XP_074606407.1 in Acropora palmata

Genomic Location: NC_133893.1:14797261...14801627
NR annotation: XP_029192493.2, uncharacterized protein LOC114958815 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606407.1

ATGGCAACCGAGTTAAAGGAAGCGAAGAAGATACGAAGGAACGCGAAAGCAGCTCTCACTAGATGTGGGAAGAAGTTAACGAGCCTACTTGATTTTGGTAGACCAGAAAGTGAGGTAAGAGATGCTTTAAATGAAGTCAAAGAAGCATATAGCAATTTAGTGACGAAACATGAAGAATACACCAAAATGATTGACGATGATGAACAGTTTGAAGAAGCTGAGAACTGGATGTCTGAATGTCAAGAAAGCTTTTTAAGGCAGGAAATAAAGGCAAATTTGTATTTGGATAGTTTGATTGCGCCAAAAGCGAAATCGAAAGAAAAGGGTGAACAGCATGAGATGGGAATCTCAACTATTCAGTTATCAGAGGAAAATGTGCCTTCCGATGGCGGTTCTATTGAGGGCGGTGAAAATGCCATCCCCGCGGTTCCTGTGGTTATTAATTCCGACACCCATGAAAGTGTTAATAATGACAGCCTTCAAGCAACAATTCCCGGAGGTAGTTCCTGCAATTTCAAGATTGAAAAACCGAAGTTATCAAAGTTTTCCGGGGACGTTAGAGAGTATCTCATTTTTAGAGCTGATTTTAAACACGCTATTGAAGATAGGTACTCAAATCGAGACGCAATCACCTTTCTGCGGTCATGTCTCCAAGGAAAGCCTCTTGATTTGATAAAAGGAATTGAAACGGATTACAAGGCCGCATGGGAGTATTTAGACTCTATCTATGGAGATCCTAGATTTGTTTCAGACACGATCACTCAAGATATAGTTAAGTTTCGTACTCTGCAAAATGGCGAGGATGCAAGATTTTGTGATTTAGTGCATTTAGTCAAAAGGTGTTACAATACGTTAAAGGAAGTGGGTATTCCCGGTGACATGAACAATAGTCACATGTTGTCTGTTATTGAACAAAAGATGTGTGCGGATGACCGCAAGGTTTGGTCTAGAGATCTGGAGCGAGAAGGAAAAGGTGCCACGCTTCAGGGTTTAATAGAATGGATGACTGTGGAGATGAAATCGCGTATGCGCGCAACGGCCCCGCTCAGAACCGGCGCAAGTAACAATCGTTCAGTGCATCACGTACGAACCGAAGGCAGCGTTAGAGGTAATTCAAACTGGCATAAATGTTGGTTATGTCATACATCGACCCATTGGCCGGATCAATGTCCGCGGTTTGCCGCAATGGGCGTAGACGAGAGAATTAAGACCGCCAAAGAAAATCACGTTTGTTTCGGGTGTTTGAAAGTAGCTGGCAGAGAGCACAGATTGGAAAACTGCCGTCGTAAGCAACGCTGTACCAAGACAGAGAGAGGGGAACAGTGCCAATGCTTCCATCATCCACTTTTGCATAAGAGTAATGCGATCAGAGCAGGAATAGCTGCATTCATGGAAGGTCAAGGAGCACTTCTGCCAGTAATTTCCGCAAACCTTTGTGGCCAAAATGGAATCTACAAACGTGGCAATGTTCTGCTCGATACCGGAGCGCAAATCAGTTTGATTCGCAACGACACAGCTGAACTGTTAGGGCTAAAGGGGAAGGATACATCAGTAACCATAACTAAAGTTGGAGGTGAAGAGGAAGTAATGAAAACGAAGGAGTATCGAATTCCAGTGAACGCTTTGGACGACACCCGGAAATATTCAGTGAAAGCCATTGGAATCCCCAGTATTGGCGATGATGTTACCGCAGTTCAAACATCGAAGCTTGCTGACCTCCTTTGTGTACCAAAAGAAAAGATTCATAGAGGAAAAGGGCAGATTGACATACTGATTGGTATAGATCATGCTCATATTCGTACAGGGCAAACGAAGCAAGTTGGACAAATCGTTGCTAGAAAGACGCCCCTAGGCTGGGTAGTGTTCGGAGGTTCCACAGAAACGTTTCCGTCAAGCAGTCGAATACTTTTTGTTAAGCACTCAACGCCAGTTGACCTAACAGACTTCTGGACAACAGAAACCATGGGAGTTAAAGTGAAACCATGTGTATGTGACGCCGACAAGCTGAGTCAAGTGGAAAGGGAGGAGGCTGAAGTGGTAAACAGTTCCTGCGAGAAGGTTGGAGCGCAGTGGGTCATTCCATATCCCTGTAAAAGAGATCCGAACCTTCTTCCAGACAATAAGTCGCTGGCATTAAAACGATTAGAGGCAACGGAGCGCCGCCTGAAGTCCAGTCCAGATCAAGGCGAGTCCTATGACAAACAAATGAGAGAAATGCTCGAGATGAACTTCTGCAGAAGGCTGTCACAAGAAGATCTGGAGAGTTATAACGGTCCAGTCCACTACATTCCCCACCATGCAGTTTTGAGACCGGAAAACAGAAGTACACCCGTACGAATAGTGTTCAACTCTTCGTCTGTTTTTCAAGGTCACAAGCTCAATGATTACTGGATGAAGGGTCCAGACCTACTGAACAGTTTATTTGGTGTGTTGCTAAGGTTTAGAGAGAGGGATGTTGCTTTGCTCGGAGACATCTCTGAGATGTATCATCGAATATTGATTCCAGTTCAAGATCAGCATGTCCACCGATTTTTATGGCGAAATTTAGAAACCCATCGAGAACCTGATGTTTACGTCAAAACGGTGCTCACCTTTGGCGATAAACCTGCTCCAGCGATGGCACAAACTGCTCTAAGGAAAACCGCTGAAGAAAACAAGTCCGGCTACCCAGAAGCAGCAGAAGTTCTCCAGAAGAACACATACATGGACGACATTTGTGACTCCGTCAACACAGTCACCGAAGCTAAACAAATGGCCAATGATCTGGACATTATTCTAAAGACAGGTGGATTCAAGGTTAAAGGTTGGATTTCAAACAAATCACTTGAAGACCATGCGCAGATTGAGAAACCGGCAGAGATAGCGGTATTCAGGGGAAATGTCCCAGAGAAGGTCCTTGGAATGGCGTGGAATAACCAAGCGGACACGCTCACGTTCAGCGTCGACTCTGATGCGATAGATCACGTGATTGGAGACGGACAACTTCCATCCGAAGGGAGGCTAACGAAGAGGGTTTTACTCAGTCAAGTCGCTCGGGTTTATGATCCTCTTGGTCTCGCTGCTGCTTTCCTTATCAGAGCAAAAACCGGATTACAAGAACTATGGCAAGCCGGAATTGATTGGGACGAAGAGGCCCCACCAGCTGCCCGTGAAAAGTGGAAAGATTTATTTCGAGAAATGAAGGAGTTAAGTAGGATCGAGTTTCCCCGCAGTTTAACGCGTGCTGATGCAGAAGAGCCTCCTATGCTGTGCGTGTTTTCAGACGCATCCCAGTATGCCTTTGGAGCTTGCGCTTACAGCCGACAGAGGATTAATGAAGACCAGTATCAAGTCAGGCTAATTGCAGCGAAGTCACGGGTAGCACCCTTGAAGCAGCTAAGCATCCCACGACTTGAGCTACAAGCGGCAGTTTTGGCGTCTAGATTAGCTAAGACTATTCAAGAAGAATCACGAATGGAATTCGAAGCCGTCAAGTTCTTCGCAGACAGCACGATAACCCTTGCCTGGATACAGAATCCGTCACGCAATTTCAAACCATTCGTGTCTTCGCGTGTGGGAGAAATTCAAAGTGACTCTGACCCTAGTGAATGGAGACATATCCCTGGTGAAGAAAATGTCGCTGACGATATTTCTAGAGGAATTCATGTAGGAGATCTGAATGGAAGGTGGACTCACGGACCAGAGTTCTTACAAAAGCCAGAGAAGCTTTGGCCACAAGCGGTAGCAAAACATATTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074606407.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606407.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

80TPM > 0

2Conditions

3.6Max TPM

0.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	44	0.59	3.60
all_coral_tissue · baseline	38	36	0.40	1.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.60
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.71
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.15
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.10
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.99
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.98
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.90
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.89
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.86
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.81
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.81
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.73
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.73
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.72
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.66
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.66
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.65
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.59
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.55
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.50
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.50
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.48
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.46
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.44
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.43
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.40
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.40
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.38
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.37
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.36
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.35
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.29
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.28
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.28
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.26
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.25
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.25
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.24
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.22
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.22
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.18
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.15
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.13
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.11
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.42
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.04
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.77
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.74
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.71
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.71
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.70
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.59
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.58
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.57
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.54
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.44
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.43
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.43
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.41
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.37
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.37
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.36
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.36
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.35
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.35
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.35
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.34
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.31
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.30
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.26
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.23
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.22
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.21
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.17
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.16
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.14
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.11
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.09
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.07
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.04
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.