Gene detail

Detailed information of XP_074606531.1 in Acropora palmata

Genomic Location: NC_133893.1:18784930...18792243
NR annotation: XP_015766087.1, PREDICTED: cartilage intermediate layer protein 2-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074606531.1

ATGACCTCCACTTTGAGTAGCCAGACTCAGTTAGAAGCGCCCACATCTATTTTGCCATCTTCCATTGCGACAAGAACAACTATTTCTGCTTGCAGCACTTGTAATAAGCTGTCACTGTCTCGTGAGGATATAACAATTTCATCAGCATCGACTATATCCTCTCTCTCATCAATCATGGAGCTTGTTCCAAATACAGATGCAAAGTGGTCTCGTTGGAGTCCGTGGAGTGATTGCACCAAAACTTGTGGCAACGGAACCCGCTTTCGCACCAGAACATGTGTTGCACAAAATCAGCCACCAGTTTCAGCCCATATTTCATGTGCGGGGAAATCTCAGCAAACAAGTAATTGTTCCCAGTGGAAATGCCCAGATTGCAGGAAAACGTGCCTTAAAGGAACCCTGAACGCTGCGTGTCATGCCTGTCTGTGTGATGACCACGTGCTTACTGGGCGCGTTCAAACTACCAATAACGCGCCAATTGCAGGAGCCAAAGTTGCCTTCTCTGAGACACCGTACAAAGCTCTAGCGAGAACAGATGAGAAGGGTTTCTTCAAAGCACTCAATGTTTGTGCAGATGCAAACCAGGAACTTCTCATTAGCGCCGCTGGTTTTGTTCCAATGAAAACAGTGGCAACTATCTCCAGCTCCAAAACGGCAAACGTTCAAGTGAAACTACAGACGTCAGTACCTCCGATAATAACCGTTCATCCACAGAGCAAGATGCGGTTTTCTGGTGACGCCGTAACGTTTTGTTGTGACGGAGAGGGCAATCCCTCTCCTGAAATCGAGTGGTTTAAAGACAACAATATTATCGATAAATCCATCTACGCTTACGACAAGCACCTTGAGCTTAGTAACGTGACTGGTCTAATGGGGAAATACCGATGCCGAGTGGTGAACGACTATGGAGCAGAGTTTTCTGAAGTTGCTGATTTGAACGTTTTCAGTTCAAGAAAAAAAGATTCGTGCAACCCGACTCCCATCAGTAAAATTGCAACACTTCCCACGGGCTGTGTTGTGAATGGGACAACAAGCAATATTATCGATGTGGGAGAGTGCCAACCGATTCCGTGTATTCGAAACGATTCCATTCTCTCAAAGAAAAATTGCCATGATGAGAAGTTTTGTTGCTCGGTTGAAGAAGTAAGCGACGTTACCATAAGATGTGGAAGCTCTGTCACATTTGCAATCTCAAAAGCATCTCGTTGTGGCTGTCAAAAATGCGAAGAACCCAAGTCACAAATTAATGGAGTTCTCGTTGGTCGAAAAGGGCAGACCGAAAAACCCATTGCCTACAGCGATTTTACCTTTAAAGGCTTTTCATACAGGACAGATGACAACGGCTTTTTCTCTTTTGAAGTGCCTACTGGAGCGAAAAGGGTGTCCGTGGTATTCAGGGACACTTATGACGAAGAATTTGCAGATTTGACGAAGGTTTTTCACGTCGAAGATGGTCAGACATTGTTTTCAAAAATTATTCTCAAACCGAAGCCTATTCCACAGTCATTTAATACATACAAGGTTCAGCTCGGTGAAAGTCAAAATGACACGGGGTTCGCTGAGATGGTAATTCCAGGAGATTCTTTGTTGAAGGATGATGGCAGCGTGTTTTCTGGTCAAGCAAACCTAAGAATGGACGTCGTGGATACCCGAAGCTTGTCTGATATGGTAGCAGCTCCAGCCGATTTCACCACCGTTGACGAGGATGGAGAAGAACAAATGTTGGTCAGTTACGGAATGCTTAGTTTAGACTTTGAAGATGACAGTGGTAACAAGCTTTCTCCATTTAGGCCCATCAAACTCTATCTCGACCCTGAAAAGCTAAACATATCCGTTGATAGTAATGGAAACACCACAACAAAACTTTGGTGGCTGGACTCCACAACAGGCCGATGGATCGAGGCATCTGGTGTGCGAGTGGTAAAGAAAACCTCTGGTAGAGGCAAGCGATCTGTGACGCACTTCTTGCTAGAAACTGAAGTAGCTGCAGACATTTCGAGGCAAGGGAGACTCAATATCGACTATCCTACGCCTCATTACGCCGCAGTTCGAGTAAACGCTCCGATGCGATCATCTATTAGAATACTATGCGAAGAGCCTGGTTCAATCCCGAAAAGGTATACGGGATATTTCGAAGAAACTGCCTGGTATTCAGAGATTGTCTGCATAAACCTTTGGGTTGATAGACTGTGTTATATACAAGGAGAAAGTGAAAATTCCACGTTTTTGGAACCTTTCCCTCCTGATAAATTTCCTTCGTCTGTTTCGGCGAAAGTTGTTTCAAACGATATTCTTAAAGGCTCCACCCGCCGAATAAATTCCTTTAAATTTAAAGTCAAGACGTCAACTGATGGACCAGTATTTTCTGGAACCAATGGCAGAGAAGGTGTTAGGAGATGCCGCCAAGGTACCGACCTTCTACAGTTTGAATTCAAGTATCCTGTTTCTCCGAACATAAGTCTCAAAAGTACTCGTGAAACTCGTGGGAAAAACGTCAGAAACTGGTATCCTAATAACAAAGCTTGTTTCATCAAAATATTGACAACAGGAGAAGGACCCTTATTCCTCGTCACAAGTTATTGGCCAAATGAGACGTACAGATATGGAAACTCTGTTGAAACTGCCGAGAGGGTGCCTGGAAAAAATGTTTTTGTTGCTTGTGTTGAGATTCGATGTCCAGGAAACGTGTACCATCCAAAATCAGGTAAAAAGCTTCCTGAGTGGACCTACCTCCACGTCACACACTTGACTGGAAACTGTAACCTAAAGGATGTTAAAAATAATCTGGCTAACCAAGAGAACCTTTATGGCGGCAATAGAGGCAACTGTTCTCACTACTCTAAAAGTCATTCACCAGGATCCGCTGAAGCATGGCTGTGTGTTCCCCTCCGAAATCGTGGCTTCGACATCGATTTTGTTTATACTGGTAACAAAAATGATCTTACCATTGGTAAGAATCGGTGCTTAAACGGGAACAACCGTTGGAAACGAGGGCAGTCTTCACAAGTAAACGAAAACGGACCTACAATAAGGATCCCTTGCAGTTGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13620	CarboxypepD_reg	Carboxypeptidase regulatory-like domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008969	Homologous_superfamily	Carboxypeptidase-like, regulatory domain superfamily	Interproscan
IPR039675	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24436	CILP; cartilage intermediate layer protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala