Gene detail

Detailed information of XP_074606546.1 in Acropora palmata

Genomic Location: NC_133893.1:20764491...20772724
NR annotation: XP_015762741.1, PREDICTED: hemicentin-1-like isoform X1 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606546.1

ATGTTTTACTATCAAGTACTTGGAATACTTTTAAGTGTGTCTTTAAGAATGCACCAGAGTGAATCCTCTTGCAAGATTTGTCCTGTAGAAACGAGGCTCGGTCCGTCCTCATCGGATGTAATCCTGGGACGTCTAAAGTGTTCGTCAACGTTCGGCGTCAATTTTGCTTCTTCTTCCTGGATACGAAATGGTACAGCAATTGAGAGGAAGTACATTCAGGAAAACAAAGAAAAGATCTGGACTGCAGTTTCATTTGTCAATTTTAGTACTGCAGAAGATGGCGAAACATTCGAATGCCAAATATCGTATCCCAATAACGGTGGGACTTCTAAATGTCACGTTACTCTAGGTAAGCCGCGGCTGAAGAAGCTAGAACCGAAAATCTTCGATGAATGGAATGACCCGGTCAATAACATTCAGTGGAAATGTGTCATAGAAAGTGGATGGCCAATTCCTATTCTGTCCTGGTGGAAAGATGGTTCAGAGATTTCTAATGGGGACTTCGGTGAAACACGCTATATATGGTACTCAGAGGATAAGAAGGTGTTGACCCTATCTATACTGCGTCTGAATGGCCAGCATCATGGTAAATACACTTGTCGAGCAGAAAATATGTTTGGCAACTCTACAGAAAACACGAGACTGCTGATTAATAGACATGGAATGATCCGATTTCGACCTGATTTGAAAACGATTGAAATCCTTGAAGGACAAAATATCACTTTGGAATGCATATGCTCCGCTAAGGAATGCCTTGAAGAGCCAGCCAGTTCAGCGTACTGGAGATTTAACGACCGTGATATTTCTCGAATTGAAAGGCTCACATTTTTGCACAAGGTTACCGGAGGTCATGTTATCATCTCCCTGATTATACGAAACGTCTCGCAGCTTGATGATGGATCGTATTTGTGTGGCATTAATACGTCCAAAGGATTTGATGAAGCTTCAAAACGCTTGCATGTCGTGACGAGAGATATGTTTCGAGTCTCGGCGAAAAACAAAGCGGTGTCTGTGCATCCTTACTCACCAGCATTTTTCAGATGCTCGGTCATTTATCCTTCGGTTCTCAAACGTGCACCAAATCCGTTCTGGACCAAAGATGACAAGAGCTCTCTTGATCCACAGCATTATAAACAAGATAATTTTCTACCTGAAGGCCGCAACTCGATCACAATTCTTTATTTTCAACTAACCATTTCTAACGTCACCCTCAAGGATTACGGCGGGTATTCCTGCGGCGCGACGATCAACATTGGTAGCTCTGTGATACACCGTTTCCAGAATTTAATATTAATGGCGCAAACCAAAGAAGGACATGGAATGATCCGATTTCGACCTGATTTGAAAACGATTGAAATCCTCGAAGGACAAAATATCACTTTGGAATGCATATGCTCCGCTAAGGAGTGCCTTGAGGAGCCAGCCAGTTCAGCGCACTGGAGATTTAACGACCGTGATATTTCTCGAATTGAAAGGCTCACATTTTTGCACAAGGTTACCGGAGGTCATGTTATCATCTCCCTGATTATACGAAACGTCTCGCAGCTCGATGATGGATCGTATTTGTGTGGCATTAATACTTTCGAAGGATTTGATAAAGCTTCAAAACGCTTGCATGTCGTGACGAGAGATATGTTTCCTCGAGTCTGGGCAGAAAGGAAAGAGGTGTCTGCGCATATTTACTCACCAGCATTTTTCATATGCTCGGTCATATATCCTTCGGTTCTCAAACGTGCACCAAACCTGTTCTGGACCAAAGATAACAAGAGCTCTCTTGATCCACAGCATTATAAACAAGCTAATCTTCTACGTAAGGAAGGTCCCGACTCGACCAGAATTCTTTCTTTTCAACTAACCATTTCTAACGTCACCCTCAAGGACTACGGCGGGTATTCCTGCGGCGCGACGATCAACATTGGTCGCTCTGTGATACACCTTCTCCAGAATTTAACAATAATAATGAAGCAAATCAAAGTCTCTGGCGGCGTTACAGATAAAAAAGATTTGCTTGGTACCAACGAAAATTCGCCGGGCACTCTATCCTTAATCGCCGCTGGCTCTGCCGCAGTTGGTTTTGCCATGGGCGTTATTTTTGTCGCGTACAAAATGTGTCAAAGAAGGGGCTACACTTGGAAATCATTCTTTGATGTTCCGGTGGATAGCCTGAGTTGCCAATTTCAATATGATGTATTCATTACCTTCAGTAGCCAAGACTCAAACTGGGTGAAAAAGGAGCTCATCCCTCTGGTGGAGAAACACAATCTCAATTACTGCATATATGATAGAGACTTCGAAGTTGGTAAGCCTGTGGTTGACAACGCCGCGCACAGTGTGTACACCAGTCGCAAAGTCCTGGCCGTTATGTCCCACAATTACATGTCGAGTGAGTTTTGCCGCGGAGAACTGGAAATGGCCTTATACCGCTGTGCGAAGATGGGTGACCCGTGTGTAATTGTGATACGAATCGACAGCATTGACCTGAGAAAAATGCCCAAAGCTTTAAGAAATCGCACCTTCCTGGATTATTACGACTTAATTGAGAGAAAACCTGGAAAGAACGGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2
Q0ZUL9	Toll-like receptor 6 OS=Dasypus novemcinctus OX=9361 GN=TLR6 PE=2 SV=1
Q9EPQ1	Toll-like receptor 1 OS=Mus musculus OX=10090 GN=Tlr1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01582 all species →	TIR	TIR domain	Family	Interproscan
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR051170 all species →	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231 all species →	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074606546.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606546.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

49TPM > 0

2Conditions

44.4Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	28	3.26	44.45
all_coral_tissue · baseline	38	21	1.77	14.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.45
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.38
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.69
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.30
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.03
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.07
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.76
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.70
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.52
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.08
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.04
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.90
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.83
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.66
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.37
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.06
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.83
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.74
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.64
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.38
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.33
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.30
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.15
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.95
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.90
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.66
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.64
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.85
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.65
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.36
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.16
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.88
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.78
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.55
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.52
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.50
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.45
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.44
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.35
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.32
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.31
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.27
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.25
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.17
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.93
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.92
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.91
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.86
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.80
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.