Gene detail

Detailed information of XP_074606783.1 in Acropora palmata

Genomic Location: NC_133893.1:16289176...16317363
NR annotation: XP_029211438.2, exocyst complex component 3-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606783.1

ATGTCGGTCGATATACAGAAGTGGAAAGCTGAGGCACATGAAAATGCCGCAAAGACTGTGGCAAACATGCTACAGCACCCTGACAGTCTTGATAAAGTGGAGCAATGGAGGAGAAGATACATGAGAAACAAAGCATCAGCAGAGGCCAGACTCAAGACAGCTGTTCAGTCACAACTTGATGGAGTCAGGACAGGTCTCTATCAACTTCACAGTGGCCTTCATGAAATCAAAGAAATAAAGCAAAGCATGAATGAAGTTGACTCCATGTGCAAGAACGTGAAATCACTGGCTGAAGAACTGCAAGCTGTTAGAGAATGTCAAAAACATCAAAGCCAGATTTCCAAAGCTTGTGGACATCTTAACCTCATATTCACTGTTCCTGAAAATGTGAAAAAAACTGAGGCTCTGATCAGTGATGGAAAGCTGCTTCTGGCTCACAAATGTCTCTCTGATTTGGAAGCCACGCGAGATGAACTCTTGTATGAAGTACACAAGATGTCGCAGGAAGAAGAAGGTCCAAAACCTGACAAAACTCCATTGTTTAAATACTTTGAACCGGTCAAGAAACTATCTGAGTCTCTCGGAAAGCAATGTTGGGTGGTGTTGGGCCGAGTGTTGAGTACAGTTCGCAGTGACCCTGCTCAGCTGGTGACAGCGCTAAGAATCGTCGAGAGAGAAGAAAGAGCTGACAAAAGAGCTAAGGAAAAAGAAGACAATATTCACTTCCTGGTGCCTGGGCGGCCGAAGAGATGGAGAGCGATGGCTTTTAAAGTCCTCGAGGAATCTGTCAGTAACAGGTTTGAGAGCCTTGAGATGGAATTGCAGGACAGGGTCGATGACAAGATGTGGCTTGTGAAGCATTTGGAGCGAACCAGACAGCGAGTATTGGATGACTTAATTGTTGTTAAGAATCTCTGCCAAGACTGTTTTCCTCCAACTTACAACATATTTGATCGTTTTATTAAGATGTACCACAAGGCACTATCCATGATGCTGGAAAGGTTAATTCTGGAAAAGCGGCTTGACTCAAATGAGTGCATCAGCCTCTTGACTTGGATCAGAGAATACAAGGGAACCGATCTTATGAATCATTCAGACTTGCAGATAGATGTGGAATTTCTGGGCTTCCTATTGTCACCCAGAGTAGAACAGGAACTCTTAGACACATATCTAACAACGACTAAAAGCAACATGGCAGAGTGGATGGCCAAACTCGCCGAAACTGACGTGAAAGATTGGCACAGCGAGGCCTTACCTGAGAAAGACCTGCAAGGTTTTTACAACACCTCGCTTCCCGTTTTCTTGTTCAAAATGATTGATCAAAATCTTCAAGTTGCGGCCAAAGCAGGAGAGGGGATTAAACTACAGATGCTTGATATTTGTTTGGAATCTATTCAAGGATTTCAACGAGAGTACAGAAATGCTATTCGAAAGTACAAGAGCAAACACTTCGAAGACAGAAGCCAGCCTGCCAGATTTGTTGAGTACATGGTTGCCATTGTTAACAACTGTAAATTTTGCATGGACTTCACAGATCAACTCAAGGATCGCCTGGTACCTGAAATTGGTAAGGCGGTGTTTGGCGAAGACAGGGAGCGGTCCTTTAAGGATGTTGTGGCCTGTTTTGAGCAACTGGGACAAGAAAGTGCTGGATACCTCTTGGAGGAAGTTTTCCTGGATCTTGAACCTTACCTCTCCCAAATTATGACTCCTGCTTGGGTCCCAAGCTCAGATGCTATTGACACCATCATCGTGACAATAGAAGATTATTACAGTGACTTCTTACACTTGATTGGGAAGTTCCTTGATTATCTCATGGAAGAAGCTTTGAAGAAAGTTCTTTTAGAATATGTTAGAGCGCTGCTGACCAAACGCATTGCATTCAAGGATTACGAAGTGAGGAGAGACGCTGCTAAAAAGATTACTGAGGAATCCAAGAAGATCGAAAAGCTTTTCAGGAAATTGGCAACAGCGACTTTGGAGCCTGAAAAGAAGTGTTCCGTCCTTCCAACTCTCGCTGAAGTCATCAAACTGAAAGATACGTCAATGTTGGCTTTGGAAATTACCGAGCGTTGCTATTGGCGCGGAAAGAACAAGGGCGTCATGACGTCACGAACATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62825	Exocyst complex component 3 OS=Rattus norvegicus OX=10116 GN=Exoc3 PE=1 SV=1
O60645	Exocyst complex component 3 OS=Homo sapiens OX=9606 GN=EXOC3 PE=1 SV=3
Q6KAR6	Exocyst complex component 3 OS=Mus musculus OX=10090 GN=Exoc3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003544 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06046 all species →	Sec6	Exocyst complex component Sec6	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010326 all species →	Family	Exocyst complex component EXOC3/Sec6	Interproscan
IPR042532 all species →	Homologous_superfamily	Exocyst complex component EXOC3/Sec6, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21292 all species →	EXOCYST COMPLEX COMPONENT SEC6-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0051601 all species →	Biological Process	exocyst localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06110	EXOC3, SEC6; exocyst complex component 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606783.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

75TPM > 0

2Conditions

91.6Max TPM

42.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	40	38.13	91.60
all_coral_tissue · baseline	38	35	48.20	71.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	91.60
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.11
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.72
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.35
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.43
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.70
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.05
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.33
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.81
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.62
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.47
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.41
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.37
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.62
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.53
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.15
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.74
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.21
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.87
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.42
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.40
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.33
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.27
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.01
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.33
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.07
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.99
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.78
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.20
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.93
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.89
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.35
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.90
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.96
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.95
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.95
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.74
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.11
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.53
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.90
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	71.76
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.74
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.65
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.89
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.88
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	65.24
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.20
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.10
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.45
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.38
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.41
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.29
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.91
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.40
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.00
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.06
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.93
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.25
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.83
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.82
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.43
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.62
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.69
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.41
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.97
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	47.20
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	46.10
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.55
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.26
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.70
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.22
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.02
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.24
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.07
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.08
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.