Gene detail

Detailed information of XP_074606890.1 in Acropora palmata

Genomic Location: NC_133893.1:19203651...19212629
NR annotation: XP_029205010.2, survival of motor neuron-related-splicing factor 30-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZV80	Survival of motor neuron-related-splicing factor 30 OS=Danio rerio OX=7955 GN=smndc1 PE=2 SV=1
Q6DEY1	Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=8364 GN=smndc1 PE=2 SV=1
Q3T045	Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMNDC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06003 all species →	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010304 all species →	Domain	Survival motor neuron, Tudor domain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13681 all species →	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12839	SMNDC1, SPF30; survival of motor neuron-related-splicing factor 30	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.