Detailed information of XP_074606902.1 in Acropora palmata

Genomic Location: NC_133893.1:247433...267517
NR annotation: XP_029195761.2, calmodulin-regulated spectrin-associated protein 1-B-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5T5Y3Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens OX=9606 GN=CAMSAP1 PE=1 SV=2
A2AHC3Calmodulin-regulated spectrin-associated protein 1 OS=Mus musculus OX=10090 GN=Camsap1 PE=1 SV=1
Q6IRN6Calmodulin-regulated spectrin-associated protein 1 OS=Xenopus laevis OX=8355 GN=camsap1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002044 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08683
all species →
CAMSAP_CKKMicrotubule-binding calmodulin-regulated spectrin-associatedDomainInterproscan
PF11971
all species →
CAMSAP_CHCAMSAP CH domainDomainInterproscan
PF17095
all species →
CAMSAP_CC1Spectrin-binding region of Ca2+-CalmodulinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011033
all species →
Homologous_superfamilyPRC-barrel-like superfamilyInterproscan
IPR014797
all species →
DomainCKK domainInterproscan
IPR038209
all species →
Homologous_superfamilyCKK domain superfamilyInterproscan
IPR022613
all species →
DomainCalmodulin-regulated spectrin-associated protein-like, Calponin-homology domainInterproscan
IPR036872
all species →
Homologous_superfamilyCH domain superfamilyInterproscan
IPR032940
all species →
FamilyCalmodulin-regulated spectrin-associated proteinInterproscan
IPR001715
all species →
DomainCalponin homology domainInterproscan
IPR031372
all species →
Conserved_siteCAMSAP, spectrin and Ca2+/calmodulin-binding regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21595
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005516
all species →
Molecular Functioncalmodulin bindingInterproscan
GO:0007026
all species →
Biological Processnegative regulation of microtubule depolymerizationInterproscan
GO:0031122
all species →
Biological Processcytoplasmic microtubule organizationInterproscan
GO:0036449
all species →
Cellular Componentmicrotubule minus-endInterproscan
GO:0051011
all species →
Molecular Functionmicrotubule minus-end bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0030507
all species →
Molecular Functionspectrin bindingInterproscan
GO:0031175
all species →
Biological Processneuron projection developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17493CAMSAP; calmodulin-regulated spectrin-associated protein-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606902.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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