Gene detail

Detailed information of XP_074606977.1 in Acropora palmata

Genomic Location: NC_133893.1:1899691...1917496
NR annotation: XP_029184280.2, myosin-2 heavy chain, non muscle-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074606977.1

ATGATGAATCAAACGTTGAGCGATGTTGAGGAACGCCGTGAAAACATCGCCGGTGCAGCCAATGTTGGTCCTGAAGGAATTACGCCACCTGATCGTAAGAGGTTCCAGCGGGAAATGGATGAAATCGCCGAAAGAATTCGAGATCTCGAGGCCACACTTAAATCCCTTGACAAACAACTTTTGTCACACTCTGGCGCTAATTCCAAGGCGAATGCGTACGTCGATCGAGAAAAATTGCTCAGAGAACGGCATGAACTTCGAGTACAACGAGAAAAGACTATTGAGGAAAGGAAGAAGATCGACCTGGATTTAAAAGGACTGAACGATCAAGTTCAGAGAAAGGATGATGCCTGCGCAAAGCTGAAAGCTGGTTTACGATTCAAAACAGAGGCAGGGATTGATGATGCTGTCAAGAGGTTGGAACGACAGGTGCAAGTTCAACAACTTAGACTCCAAGAAGAAAAGAGACTGGTGGCAGAGATCAATAAATTGAAGCGTTCCAAGCGAAATCTAAGCGAGTACTTGGCCTTGAAAGAGGAGGTTGACCAGTTGAGAAACAATCAGACTAAGCTTAGGGAAAGAAGAGATGGGTGTGTCAAACAATTAAATCGTATGAAATCAAGAGAAGAAGTGGTGAAGAATTTGCTAGAATCAAGTGATAATAGCACAGTGGAGGAAGGAGAAAGTAAACAGGCTGAGCTGGTGAAGAAAAAGGAAGATGTAAAACAAGAGCTTAAGGAACTTAGGACCAAGAAAAAGAACTTGAGTGACAATTTTTCAATGGAGAAGAGGAAGTATAAAGAGGAGGTCAAAGAAATGAAAGCTCAAAAACAGAAGGAAGTATTGACAAGGAGAAAAAATGAAAGATTTGTCACACAGAAGGAAATGGAGACTAACAGAAGTAAACATGAACCTTTTGTAAAGGAAAAGGCTCTTTGTGACACTCTCATTGGCCATTTTGAAAAGCTGCATTTTTTTCAAGCACCAGATGTTTCTTCAGCCACTGCAGCAGACAAGGAGCTTAGTTTACCCCAGAGAGCAGATGCAGAATTTTCTGGCTCTGATAGTGAGGGCACATTTCTTCCTCGCAAGTCGGCCACAGATGATCTCTTCGATGTGTTTGGTGGAAACAGCAGAATTCAGAGGAAAGGCAGTCGTAAAGGAAGGAGATCTTCAGTTAAGGAGGGCCCTCGCAAACTTAATCTGCAGCTGGAAGTGGTGGAAAATATTTTAGCTCTGGGTTTGACGCCTCCCAGTTCTGCCTTGGACATTCCAAAAATTCTTGAGAAGCTGCGGGAGAAGAAGAATTTTTACGAGAGTGCCGCAACTTCTAAAGATTTGGTTGCGCATTCAGCTCATGATCCGATGACACCGATAACTGAAGAAGCTGCCCCTGAGTTCCCAAGTTCATTTATCGGAAGTGCAGAATCAGGAAATCCAGGGGACATTGCCCAAGGTGACGATGCTTTGGCTAAAACAAACGTCTTACCTGTGAACTCGATTGAGGCGCCTTTAGAAAAAAGGGACAACAGTTTGCCCAGCTCTAGTGAAAATGACAACGGCAGTCTTCAAACGGAAGATATCAGCTGTACAGATTTAAAGCTGCGAGACAACTTACTCCTTGAGGAAAACGGAGCTGTTGATATCAAATCAACAGTTGCCTTGCAAGTGGATGAAACAGCAATAAAAGGAGAAGGCAGAGGGAGTGACAGGTACTCTGTTATTCACCAGAAGGATGAGTTAAAGTTTGAAGAAGGCAGTGCAGAATGTGTGGAAAGTCAAGATTTGTTTCTGCCTTTGGATGGAGCTACATCAAACGCTGCGGAAAATAACAATGGCAAAAGTGAAGAAAGGAGCAGCAATGCAAAATCAAAAGATGAGTTGCTCATTGAAGAGAATAAAACTCCTTTTCCTGTATTTCCGGATAACTGTGCCACGAGAGAGGCTGTTTCATCGTCCTTGCTGGTGGCAAAAGACAGAGGTGGCCTTGAAGAGATCAGTCATAGTGGTATGGACCAGGTAGGCGAACAACCATACAAAGAAGGCAAGGCAACAGGAGAGTTGCAGCAGGATTTGCCGAGCTCTGATAAAACAGAAGAGGACATTCCTGAAGAAGATGAAGTCGGTCAGACGACAGGTGAGAAGACGTTCTCCAACCAGAGCTCGAGCAATTGTGCCTCAGAGAATCACAGATGTGGCGGTTACCTCGCGTCTTCCCCTCACAGCAACAGGTTGGTTGATCACAATGCAGCCTTTGAGAGAACCTCTCTCAATGATGGAGGCGCTATGGTTAACATGTTAGGGTTAGGTGAAGAGAAGTGCCCAGCCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005344 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074606977.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039604 all species →	Family	Nuclear segregation protein Bfr1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31027 all species →	NUCLEAR SEGREGATION PROTEIN BFR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008298 all species →	Biological Process	intracellular mRNA localization	Interproscan
GO:0042175 all species →	Cellular Component	nuclear outer membrane-endoplasmic reticulum membrane network	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074606977.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074606977.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

84TPM > 0

2Conditions

42.1Max TPM

18.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	46	19.41	42.09
all_coral_tissue · baseline	38	38	17.92	31.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.09
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.94
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.36
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.67
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.54
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.04
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.81
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.29
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.34
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.85
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.75
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.71
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.69
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.25
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.25
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.72
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.48
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.08
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.01
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.87
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.59
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.35
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.28
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.96
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.99
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.99
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.48
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.13
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.67
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.02
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.01
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.77
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.04
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.44
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.92
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.84
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.51
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.36
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.93
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.64
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.45
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.01
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.03
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.56
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.40
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.59
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.63
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.76
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.65
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.75
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.68
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.64
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.52
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.42
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.31
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.10
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.08
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.89
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.15
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.57
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.33
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.30
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.14
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.66
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.41
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.75
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.68
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.50
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.47
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.06
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.35
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.21
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.67
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.48
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.93
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.38
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.63
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.38
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.88
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.68
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.48
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.95
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.61

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.